Literature DB >> 24930020

Controlling entropy to tune the functions of intrinsically disordered regions.

Tilman Flock1, Robert J Weatheritt2, Natasha S Latysheva1, M Madan Babu3.   

Abstract

Intrinsically disordered regions (IDRs) are fundamental units of protein function and regulation. Despite their inability to form a unique stable tertiary structure in isolation, many IDRs adopt a defined conformation upon binding and achieve their function through their interactions with other biomolecules. However, this requirement for IDR functionality seems to be at odds with the high entropic cost they must incur upon binding an interaction partner. How is this seeming paradox resolved? While increasing the enthalpy of binding is one approach to compensate for this entropic cost, growing evidence suggests that inherent features of IDRs, for instance repeating linear motifs, minimise the entropic cost of binding. Moreover, this control of entropic cost can be carefully modulated by a range of regulatory mechanisms, such as alternative splicing and post-translational modifications, which enable allosteric communication and rheostat-like tuning of IDR function. In that sense, the high entropic cost of IDR binding can be advantageous by providing tunability to protein function. In addition to biological regulatory mechanisms, modulation of entropy can also be controlled by environmental factors, such as changes in temperature, redox-potential and pH. These principles are extensively exploited by a number of organisms, including pathogens. They can also be utilised in bioengineering, synthetic biology and in pharmaceutical applications such as increasing bioavailability of protein therapeutics.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 24930020     DOI: 10.1016/j.sbi.2014.05.007

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  49 in total

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Authors:  Nikolai N Sluchanko; Steven Beelen; Alexandra A Kulikova; Stephen D Weeks; Alfred A Antson; Nikolai B Gusev; Sergei V Strelkov
Journal:  Structure       Date:  2017-01-12       Impact factor: 5.006

Review 2.  The Structural and Functional Diversity of Intrinsically Disordered Regions in Transmembrane Proteins.

Authors:  Rajeswari Appadurai; Vladimir N Uversky; Anand Srivastava
Journal:  J Membr Biol       Date:  2019-05-28       Impact factor: 1.843

3.  Cooperative assembly of a four-molecule signaling complex formed upon T cell antigen receptor activation.

Authors:  Asit Manna; Huaying Zhao; Junya Wada; Lakshmi Balagopalan; Harichandra D Tagad; Ettore Appella; Peter Schuck; Lawrence E Samelson
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-03       Impact factor: 11.205

4.  Tuning Free Energy by Backbone Conformational Entropy: A Strategy from Disordered Proteins.

Authors:  Chia-En A Chang
Journal:  Biophys J       Date:  2018-06-19       Impact factor: 4.033

5.  15N detection harnesses the slow relaxation property of nitrogen: Delivering enhanced resolution for intrinsically disordered proteins.

Authors:  Sandeep Chhabra; Patrick Fischer; Koh Takeuchi; Abhinav Dubey; Joshua J Ziarek; Andras Boeszoermenyi; Daniel Mathieu; Wolfgang Bermel; Norman E Davey; Gerhard Wagner; Haribabu Arthanari
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-05       Impact factor: 11.205

6.  Plasticity in oligomerization, operator architecture, and DNA binding in the mode of action of a bacterial B12-based photoreceptor.

Authors:  Jesús Fernández-Zapata; Ricardo Pérez-Castaño; Juan Aranda; Francesco Colizzi; María Carmen Polanco; Modesto Orozco; S Padmanabhan; Montserrat Elías-Arnanz
Journal:  J Biol Chem       Date:  2018-09-27       Impact factor: 5.157

Review 7.  Physical Chemistry of the Protein Backbone: Enabling the Mechanisms of Intrinsic Protein Disorder.

Authors:  Justin A Drake; B Montgomery Pettitt
Journal:  J Phys Chem B       Date:  2020-05-14       Impact factor: 2.991

8.  An analytical theory to describe sequence-specific inter-residue distance profiles for polyampholytes and intrinsically disordered proteins.

Authors:  Jonathan Huihui; Kingshuk Ghosh
Journal:  J Chem Phys       Date:  2020-04-30       Impact factor: 3.488

9.  Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.

Authors:  Charlotte O'Shea; Lasse Staby; Sidsel Krogh Bendsen; Frederik Grønbæk Tidemand; Andreas Redsted; Martin Willemoës; Birthe B Kragelund; Karen Skriver
Journal:  J Biol Chem       Date:  2016-11-23       Impact factor: 5.157

10.  Thermodynamic characterization of the multivalent interactions underlying rapid and selective translocation through the nuclear pore complex.

Authors:  Ryo Hayama; Samuel Sparks; Lee M Hecht; Kaushik Dutta; Jerome M Karp; Christina M Cabana; Michael P Rout; David Cowburn
Journal:  J Biol Chem       Date:  2018-01-26       Impact factor: 5.157

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