Literature DB >> 24926388

Enhanced electrohydrodynamic collapse of DNA due to dilute polymers.

C Benjamin Renner1, Ning Du2, Patrick S Doyle3.   

Abstract

We experimentally demonstrate that addition of small, charge-neutral polymers to a buffer solution can promote compression of dilute solutions of single electrophoresing DNA. This phenomenon contrasts with the observed extension of DNA during capillary electrophoresis in dilute solutions of high molecular weight polymers. We propose these discrepancies in micron-scale DNA configurations arise from different nano-scale DNA-polymer collision events, controlled by solute polymer properties. We build upon theories previously proposed for intermolecular DNA aggregation in polymer-free solutions to develop scaling theories that describe trends seen in our data for intramolecular DNA compaction in dilute polymer solutions.

Entities:  

Year:  2014        PMID: 24926388      PMCID: PMC4032407          DOI: 10.1063/1.4878135

Source DB:  PubMed          Journal:  Biomicrofluidics        ISSN: 1932-1058            Impact factor:   2.800


  22 in total

1.  Electrophoretic collision of a DNA molecule with an insulating post.

Authors:  Greg C Randall; Patrick S Doyle
Journal:  Phys Rev Lett       Date:  2004-07-29       Impact factor: 9.161

2.  Effect of nanochannel geometry on DNA structure in the presence of macromolecular crowding agent.

Authors:  Jeremy J Jones; Johan R C van der Maarel; Patrick S Doyle
Journal:  Nano Lett       Date:  2011-10-14       Impact factor: 11.189

Review 3.  Recent advances in the development of nucleic acid diagnostics.

Authors:  Louise O'Connor; Barry Glynn
Journal:  Expert Rev Med Devices       Date:  2010-07       Impact factor: 3.166

Review 4.  Molecular diagnostics on electrophoretic microchips.

Authors:  James P Landers
Journal:  Anal Chem       Date:  2003-06-15       Impact factor: 6.986

5.  Micro total analysis systems: latest achievements.

Authors:  Jonathan West; Marco Becker; Sven Tombrink; Andreas Manz
Journal:  Anal Chem       Date:  2008-05-23       Impact factor: 6.986

6.  DNA condensation by field-induced non-equilibrium noise.

Authors:  Robijn F Bruinsma; Robert Riehn
Journal:  Chemphyschem       Date:  2009-11-09       Impact factor: 3.102

7.  A low-cost, label-free DNA detection method in lab-on-chip format based on electrohydrodynamic instabilities, with application to long-range PCR.

Authors:  Mohamed Lemine Youba Diakité; Jerôme Champ; Stephanie Descroix; Laurent Malaquin; François Amblard; Jean-Louis Viovy
Journal:  Lab Chip       Date:  2012-11-21       Impact factor: 6.799

8.  Intercellular adhesion: modification by dielectric properties of the medium.

Authors:  G E Jones
Journal:  J Membr Biol       Date:  1974       Impact factor: 1.843

9.  Elongation/compaction of giant DNA caused by depletion interaction with a flexible polymer.

Authors:  M Kojima; K Kubo; K Yoshikawa
Journal:  J Chem Phys       Date:  2006-01-14       Impact factor: 3.488

10.  A fully integrated microfluidic genetic analysis system with sample-in-answer-out capability.

Authors:  Christopher J Easley; James M Karlinsey; Joan M Bienvenue; Lindsay A Legendre; Michael G Roper; Sanford H Feldman; Molly A Hughes; Erik L Hewlett; Tod J Merkel; Jerome P Ferrance; James P Landers
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-11       Impact factor: 11.205

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