Literature DB >> 15323733

Electrophoretic collision of a DNA molecule with an insulating post.

Greg C Randall1, Patrick S Doyle.   

Abstract

We study the dynamics of single DNA molecules driven by an electric field into a stationary obstacle. These collisions are broadly classified as "hook" and "roll-off" events. We show that obstacle-induced electric field gradients stretch impacting DNA and thus greatly influence the hooking probability. Consequently, in addition to collision geometry, determination of the hooking probability depends on the Deborah number (De) for 0.5<De<40. Individual DNA impact dynamics are highly configuration sensitive, characteristic of polymers in elongational flows and fields.

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Year:  2004        PMID: 15323733     DOI: 10.1103/PhysRevLett.93.058102

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  12 in total

1.  Simulation of conformational preconditioning strategies for electrophoretic stretching of DNA in a microcontraction.

Authors:  Chih-Chen Hsieh; Tsung-Hsien Lin
Journal:  Biomicrofluidics       Date:  2011-11-10       Impact factor: 2.800

2.  Divergent dispersion behavior of ssDNA fragments during microchip electrophoresis in pDMA and LPA entangled polymer networks.

Authors:  Christopher P Fredlake; Daniel G Hert; Thomas P Niedringhaus; Jennifer S Lin; Annelise E Barron
Journal:  Electrophoresis       Date:  2012-05       Impact factor: 3.535

3.  DNA Molecules in Microfluidic Oscillatory Flow.

Authors:  Y-L Chen; M D Graham; J J de Pablo; K Jo; D C Schwartz
Journal:  Macromolecules       Date:  2005       Impact factor: 5.985

4.  Regulation of DNA conformations and dynamics in flows with hybrid field microfluidics.

Authors:  Fangfang Ren; Yingbo Zu; Kartik Kumar Rajagopalan; Shengnian Wang
Journal:  Biomicrofluidics       Date:  2012-10-24       Impact factor: 2.800

5.  Simulation of electrophoretic stretching of DNA in a microcontraction using an obstacle array for conformational preconditioning.

Authors:  Daniel W Trahan; Patrick S Doyle
Journal:  Biomicrofluidics       Date:  2009-01-07       Impact factor: 2.800

Review 6.  Beyond gel electrophoresis: microfluidic separations, fluorescence burst analysis, and DNA stretching.

Authors:  Kevin D Dorfman; Scott B King; Daniel W Olson; Joel D P Thomas; Douglas R Tree
Journal:  Chem Rev       Date:  2012-11-12       Impact factor: 60.622

7.  Self-associating block copolymer networks for microchip electrophoresis provide enhanced DNA separation via "inchworm" chain dynamics.

Authors:  Thomas N Chiesl; Karl W Putz; Meena Babu; Patrick Mathias; Kashan A Shaikh; Edgar D Goluch; Chang Liu; Annelise E Barron
Journal:  Anal Chem       Date:  2006-07-01       Impact factor: 6.986

8.  Stretching DNA by electric field and flow field in microfluidic devices: An experimental validation to the devices designed with computer simulations.

Authors:  Cheng-Han Lee; Chih-Chen Hsieh
Journal:  Biomicrofluidics       Date:  2013-02-08       Impact factor: 2.800

9.  Tilted hexagonal post arrays: DNA electrophoresis in anisotropic media.

Authors:  Zhen Chen; Kevin D Dorfman
Journal:  Electrophoresis       Date:  2013-09-14       Impact factor: 3.535

10.  Dynamics of individual polymers using microfluidic based microcurvilinear flow.

Authors:  Chao-Min Cheng; Yongtae Kim; Jui-Ming Yang; Sanford H Leuba; Philip R Leduc
Journal:  Lab Chip       Date:  2009-06-03       Impact factor: 6.799

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