Literature DB >> 24920531

Refining the Neuberger model: Uracil processing by activated B cells.

Robert W Maul1, Patricia J Gearhart.   

Abstract

During the immune response, B cells undergo a programed mutagenic cascade to promote increased affinity and expanded antibody function. The two processes, somatic hypermutation (SHM) and class switch recombination (CSR), are initiated by the protein activation-induced deaminase (AID), which converts cytosine to uracil in the immunoglobulin loci. The presence of uracil in DNA promotes DNA mutagenesis though a subset of DNA repair proteins. Two distinct mechanisms have been proposed to control uracil processing. The first is through base removal by uracil DNA glycosylase (UNG), and the second is through detection by the mismatch repair (MMR) complex MSH2/6. In a study published in this issue of European Journal of Immunology, Dingler et al. [Eur. J. Immunol. 2014. 44: 1925-1935] examine uracil processing in B cells in the absence of UNG and SMUG1 glycosylases. Similar to UNG, SMUG1 is an uracil glycosylase which can remove the uracil base. While Smug1(-/-) mice show no clear deficiency in SHM or CSR, Ung(-/-) Smug1(-/-) mice display exacerbated phenotypes, suggesting a back-up role for SMUG1 in antibody diversity. This new information expands the model of uracil processing in B cells and raises several interesting questions about the dynamic relationship between base excision repair and MMR. Published 2014. This article is a U.S. Government work and is in the public domain in the USA.

Entities:  

Keywords:  Class switch recombination; DNA repair; SMUG1; Somatic hypermutation; UNG

Mesh:

Substances:

Year:  2014        PMID: 24920531      PMCID: PMC4126077          DOI: 10.1002/eji.201444813

Source DB:  PubMed          Journal:  Eur J Immunol        ISSN: 0014-2980            Impact factor:   5.532


  26 in total

1.  Mismatch recognition and uracil excision provide complementary paths to both Ig switching and the A/T-focused phase of somatic mutation.

Authors:  Cristina Rada; Javier M Di Noia; Michael S Neuberger
Journal:  Mol Cell       Date:  2004-10-22       Impact factor: 17.970

Review 2.  The multifaceted mismatch-repair system.

Authors:  Josef Jiricny
Journal:  Nat Rev Mol Cell Biol       Date:  2006-05       Impact factor: 94.444

3.  Immunoglobulin isotype switching is inhibited and somatic hypermutation perturbed in UNG-deficient mice.

Authors:  Cristina Rada; Gareth T Williams; Hilde Nilsen; Deborah E Barnes; Tomas Lindahl; Michael S Neuberger
Journal:  Curr Biol       Date:  2002-10-15       Impact factor: 10.834

4.  Different mutation signatures in DNA polymerase eta- and MSH6-deficient mice suggest separate roles in antibody diversification.

Authors:  Stella A Martomo; William W Yang; Robert P Wersto; Tsuyoshi Ohkumo; Yuji Kondo; Masayuki Yokoi; Chikahide Masutani; Fumio Hanaoka; Patricia J Gearhart
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-06       Impact factor: 11.205

5.  AID-dependent somatic hypermutation occurs as a DNA single-strand event in the BL2 cell line.

Authors:  Ahmad Faili; Said Aoufouchi; Quentin Guéranger; Carole Zober; Anne Léon; Barbara Bertocci; Jean-Claude Weill; Claude-Agnès Reynaud
Journal:  Nat Immunol       Date:  2002-07-29       Impact factor: 25.606

6.  Altering the pathway of immunoglobulin hypermutation by inhibiting uracil-DNA glycosylase.

Authors:  Javier Di Noia; Michael S Neuberger
Journal:  Nature       Date:  2002-07-31       Impact factor: 49.962

Review 7.  Mechanisms in eukaryotic mismatch repair.

Authors:  Paul Modrich
Journal:  J Biol Chem       Date:  2006-08-11       Impact factor: 5.157

8.  SMUG1 is able to excise uracil from immunoglobulin genes: insight into mutation versus repair.

Authors:  Javier M Di Noia; Cristina Rada; Michael S Neuberger
Journal:  EMBO J       Date:  2006-01-12       Impact factor: 11.598

9.  Contribution of DNA polymerase eta to immunoglobulin gene hypermutation in the mouse.

Authors:  Frédéric Delbos; Annie De Smet; Ahmad Faili; Said Aoufouchi; Jean-Claude Weill; Claude-Agnès Reynaud
Journal:  J Exp Med       Date:  2005-04-11       Impact factor: 14.307

10.  Strand-biased defect in C/G transversions in hypermutating immunoglobulin genes in Rev1-deficient mice.

Authors:  Jacob G Jansen; Petra Langerak; Anastasia Tsaalbi-Shtylik; Paul van den Berk; Heinz Jacobs; Niels de Wind
Journal:  J Exp Med       Date:  2006-02-13       Impact factor: 14.307

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  9 in total

Review 1.  Antibody diversification caused by disrupted mismatch repair and promiscuous DNA polymerases.

Authors:  Kimberly J Zanotti; Patricia J Gearhart
Journal:  DNA Repair (Amst)       Date:  2015-12-02

2.  Topoisomerase I deficiency causes RNA polymerase II accumulation and increases AID abundance in immunoglobulin variable genes.

Authors:  Robert W Maul; Huseyin Saribasak; Zheng Cao; Patricia J Gearhart
Journal:  DNA Repair (Amst)       Date:  2015-03-18

3.  Clustered Mutations at the Murine and Human IgH Locus Exhibit Significant Linkage Consistent with Templated Mutagenesis.

Authors:  Gordon A Dale; Daniel J Wilkins; Caitlin D Bohannon; Dario Dilernia; Eric Hunter; Trevor Bedford; Rustom Antia; Ignacio Sanz; Joshy Jacob
Journal:  J Immunol       Date:  2019-08-02       Impact factor: 5.422

4.  Genome-wide alterations of uracil distribution patterns in human DNA upon chemotherapeutic treatments.

Authors:  Hajnalka L Pálinkás; Angéla Békési; Gergely Róna; Lőrinc Pongor; Gábor Papp; Gergely Tihanyi; Eszter Holub; Ádám Póti; Carolina Gemma; Simak Ali; Michael J Morten; Eli Rothenberg; Michele Pagano; Dávid Szűts; Balázs Győrffy; Beáta G Vértessy
Journal:  Elife       Date:  2020-09-21       Impact factor: 8.140

5.  REV7 is required for processing AID initiated DNA lesions in activated B cells.

Authors:  Dingpeng Yang; Ying Sun; Jingjing Chen; Ying Zhang; Shuangshuang Fan; Min Huang; Xia Xie; Yanni Cai; Yafang Shang; Tuantuan Gui; Liming Sun; Jiazhi Hu; Junchao Dong; Leng-Siew Yeap; Xiaoming Wang; Wei Xiao; Fei-Long Meng
Journal:  Nat Commun       Date:  2020-06-04       Impact factor: 14.919

Review 6.  Know your enemy or find your friend?-Induction of IgA at mucosal surfaces.

Authors:  Mats Bemark; Davide Angeletti
Journal:  Immunol Rev       Date:  2021-07-30       Impact factor: 10.983

Review 7.  Detection of Genomic Uracil Patterns.

Authors:  Angéla Békési; Eszter Holub; Hajnalka Laura Pálinkás; Beáta G Vértessy
Journal:  Int J Mol Sci       Date:  2021-04-09       Impact factor: 5.923

8.  Positive Cofactor 4 (PC4) is critical for DNA repair pathway re-routing in DT40 cells.

Authors:  Randolph B Caldwell; Herbert Braselmann; Ulrike Schoetz; Steffen Heuer; Harry Scherthan; Horst Zitzelsberger
Journal:  Sci Rep       Date:  2016-07-04       Impact factor: 4.379

9.  Tandem Substitutions in Somatic Hypermutation.

Authors:  Julieta H Sepúlveda-Yáñez; Diego Alvarez Saravia; Bas Pilzecker; Pauline A van Schouwenburg; Mirjam van den Burg; Hendrik Veelken; Marcelo A Navarrete; Heinz Jacobs; Marvyn T Koning
Journal:  Front Immunol       Date:  2022-01-07       Impact factor: 7.561

  9 in total

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