| Literature DB >> 24917864 |
Lei Yu1, Yongjun Guan2.
Abstract
A large number of potent broadly neutralizing antibodies (bnAbs) against HIV-1 have been reported in recent years, raising hope for the possibility of an effective vaccine based on epitopes recognized by these protective antibodies. However, many of these bnAbs contain the long heavy chain complementarity-determining region 3 (HCDR3), which is viewed as an obstacle to the development of an HIV-1 vaccine targeting the bnAb responses. This mini-review summarizes the current literature and discusses the different potential immunologic mechanisms for generating long HCDR3, including D-D fusion, VH replacement, long N region addition, and skewed D-J gene usage, among which potential VH replacement products appear to be significant contributors. VH replacement occurs through recombinase activated gene-mediated secondary recombination and contributes to the diversified naïve B cell repertoire. During VH replacement, a short stretch of nucleotides from previously rearranged VH genes remains within the newly formed HCDR3, thus elongating its length. Accumulating evidence suggests that long HCDR3s are present in significant numbers in the human mature naïve B cell repertoire and are primarily generated by recombination during B cell development. These new observations indicate that long HCDR3s, though low in frequency, are a normal feature of the human antibody naïve repertoire and they appear to be selected to target conserved epitopes located in deep, partially obscured regions of the HIV-1 envelope trimer. Therefore, the presence of long HCDR3 sequences should not necessarily be viewed as an obstacle to the development of an HIV-1 vaccine based upon bnAb responses.Entities:
Keywords: HIV-1; VH replacement; broadly neutralizing antibodies; immunologic mechanism; long HCDR3; vaccines
Year: 2014 PMID: 24917864 PMCID: PMC4040451 DOI: 10.3389/fimmu.2014.00250
Source DB: PubMed Journal: Front Immunol ISSN: 1664-3224 Impact factor: 7.561
Characteristics of the heavy chain V-gene of HIV-1 broadly neutralizing antibody.
| Category based on epitope cluster | HIV-1 bnAb | Heavy chain genes | HCDR3 (IMGT) | VH somatic mutation | Auto/poly reactivity | |||||
|---|---|---|---|---|---|---|---|---|---|---|
| Class | Clone | V gene | D gene | J gene | Length | Potential VH replacement | No. of nt (%) | No. of AA (%) | ||
| CD4 binding site (CD4bs) | b12 | b12 | IGHV1-3 | D1-1 | J6 | 20 | No | 35 (12.2) | 20 (20.8) | No |
| VRC01 | 3BNC117 | IGHV1-2 | D6-25 | J6 | 12 | Yes | 75 (26.0) | 34 (35.4) | Yes | |
| 3BNC60 | IGHV1-2 | D3-3 | J6 | 12 | Yes | 82 (28.5) | 38 (39.6) | Yes | ||
| PG19 | IGHV1-2 | D6-25 | J1 | 13 | ND | 66 (22.9) | 30 (31.3) | NR | ||
| VRC01 | IGHV1-2 | D2-21 | J2 | 14 | Yes | 91 (31.6) | 40 (41.7) | Neg.R | ||
| VRC02 | IGHV1-2 | D5-12 | J2 | 14 | Yes | 92 (31.9) | 38 (39.6) | Neg.R | ||
| VRC23 | IGHV1-2 | D5-24 | J4 | 14 | ND | 62 (21.5) | 30 (31.3) | NR | ||
| PG20 | IGHV1-2 | D3-10 | J1 | 15 | ND | 69 (24.0) | 36 (37.5) | NR | ||
| 12A12 | IGHV1-2 | D4-17 | J2 | 15 | No | 64 (22.2) | 33 (34.4) | Yes | ||
| 12A21 | IGHV1-2 | D1-26 | J2 | 15 | Yes | 60 (20.8) | 30 (31.3) | Yes | ||
| CH30 | IGHV1-2 | D3-16 | J4 | 15 | Yes | 69 (24.0) | 37 (38.5) | Neg.R | ||
| CH31 | IGHV1-2 | D5-12 | J4 | 15 | Yes | 72 (25.0) | 37 (38.5) | Neg.R | ||
| VRC03 | IGHV1-2 | D2-21 | J4 | 16 | Yes | 85 (29.5) | 39 (40.6) | Neg.R | ||
| VRC-PG04 | IGHV1-2 | D2-8 | J2 | 16 | No | 84 (29.2) | 42 (43.8) | Neg.R | ||
| VRC-PG04b | IGHV1-2 | D2-15 | J2 | 16 | Yes | 82 (28.5) | 42 (43.8) | Neg.R | ||
| VRC06 | IGHV1-2 | D2-21 | J5 | 17 | ND | 88 (30.6) | 46 (47.9) | NR | ||
| NIH45-46 | IGHV1-2 | D1-26 | J2 | 18 | Yes | 94 (32.6) | 39 (40.6) | Yes | ||
| 3BC176 | IGHV1-2 | D5-12 | J3 | 21 | ND | 69 (24.0) | 34 (35.4) | Yes | ||
| 3BC315 | IGHV1-2 | D5-12 | J3 | 21 | ND | 48 (16.7) | 24 (25.0) | Yes | ||
| 8ANC131 | 8ANC131 | IGHV1-46 | D3-16 | J6 | 18 | No | 74 (26.0) | 38 (40.0) | Yes | |
| 8ANC134 | IGHV1-46 | D3-16 | J6 | 18 | No | 76 (26.7) | 37 (38.9) | Yes | ||
| 1NC9 | IGHV1-46 | D5-24 | J4 | 21 | Yes | 71 (24.7) | 36 (37.5) | Yes | ||
| 1B2530 | IGHV1-46 | D3-10 | J5 | 18 | Yes | 80 (27.8) | 39 (40.6) | Yes | ||
| CH103 | CH103 | IGHV4-61 | D4-23 | J4 | 15 | ND | 45 (15.8) | 19 (20.0) | Yes | |
| Glycan-dependent, V1/V2 and V3 related (QNE/supersite) | 2G12 | 2G12 | IGHV3-21 | D1-26 | J3 | 16 | ND | 61 (21.2) | 31 (32.3) | Yes |
| PGT145 | PGT145 | IGHV1-8 | D4-17 | J6 | 33 | Yes | 48 (16.7) | 27 (28.1) | NR | |
| PGT141 | IGHV1-8 | D4-17 | J6 | 34 | Yes | 46 (16.0) | 27 (28.1) | NR | ||
| PGT142 | IGHV1-8 | D4-17 | J6 | 34 | Yes | 47 (16.3) | 29 (30.2) | NR | ||
| PG9 | CH01 | IGHV3-20 | D3-10 | J2 | 26 | Yes | 48 (16.7) | 28 (29.2) | Neg.R | |
| CH02 | IGHV3-20 | D3-10 | J2 | 26 | ND | 41 (14.2) | 22 (22.9) | Neg.R | ||
| PG9 | IGHV3-33 | D3-3 | J6 | 30 | No | 40 (15.1) | 18 (18.9) | Neg.R | ||
| PG16 | IGHV3-33 | D3-3 | J6 | 30 | No | 43 (14.9) | 21 (21.9) | Neg.R | ||
| PGT128 | PGT135 | IGHV4-39 | D3/OR15-3a | J5 | 20 | Yes | 54 (18.6) | 28 (28.9) | NR | |
| PGT137 | IGHV4-39 | D2-15 | J5 | 20 | Yes | 67 (23.0) | 32 (33.0) | NR | ||
| PGT125 | IGHV4-39 | D3/OR15-3a | J5 | 21 | Yes | 60 (20.6) | 28 (28.9) | NR | ||
| PGT127 | IGHV4-39 | D3-16 | J5 | 21 | Yes | 46 (15.8) | 25 (25.8) | NR | ||
| PGT128 | IGHV4-39 | D3-10 | J5 | 21 | Yes | 59 (20.3) | 29 (29.9) | NR | ||
| PGT121 | PGT121 | IGHV4-59 | D3-3 | J6 | 26 | Yes | 56 (19.6) | 23 (24.2) | NR | |
| PGT122 | IGHV4-59 | D3-3 | J6 | 26 | Yes | 56 (19.6) | 25 (26.3) | NR | ||
| 10-1074 | IGHV4-59 | D3-3 | J6 | 26 | ND | 45 (15.8) | 20 (21.1) | NR | ||
| VRC24 | VRC24 | IGHV4-4 | D3-9 | J5 | 26 | ND | 64 (22.5) | 29 (30.2) | NR | |
| Glycan-related, gp120/gp41 bridging region | 8ANC195 | 8ANC195 | IGHV1-3 | D3-3 | J4 | 22 | ND | 80 (28.4) | 40 (42.6) | Yes |
| PGT151 | PGT151 | IGHV3-30 | J6 | 28 | ND | 60 (20.8) | 27 (28.1) | Neg.R | ||
| PGT152 | IGHV3-30 | J6 | 28 | ND | 56 (19.6) | 29 (30.2) | Neg.R | |||
| PGT154 | IGHV3-30 | J6 | 28 | ND | 53 (18.4) | 25 (26.0) | NR | |||
| PGT158 | IGHV3-30 | J6 | 28 | ND | 61 (21.2) | 30 (31.2) | NR | |||
| gp41 MPER | MPER | 4E10 | IGHV1-69 | D1-1 | J4 | 20 | ND | 19 (6.6) | 18 (18.8) | Yes |
| 2F5 | IGHV2-5 | D3-3 | J6 | 24 | ND | 41 (14.1) | 14 (14.4) | Yes | ||
| 10E8 | IGHV3-15 | D3-3 | J1 | 22 | ND | 63 (21.4) | 26 (26.5) | Neg.R | ||
| M66.6 | IGHV5-51 | D3-10 | J6 | 23 | ND | 11 (3.8) | 9 (9.4) | Yes | ||
HIV-1 bnAb information was obtained from the Antibody Database, kindly provided by Dr. Anthony West (.
*Potential VH replacement footprints were determined as reported (.
**Neg. R, negative in in vitro assay reported; NR, not reported. It should be noted that an in vivo test will be needed to determine a truly negative auto-/poly-reactivity as it was determined for b12. Although no direct auto-/poly-reactivity data for the PGT series bnAbs were reported, several representative antibodies of them (PGT121, PGT128, 10-1074, etc.) were shown to mediate effective protection in in vivo passive immunization studies, which indicates that they are likely negative in auto-/poly-reactivity.