Literature DB >> 24915404

Simple sequence repeat markers in genetic divergence and marker-assisted selection of rice cultivars: a review.

Shubhneet Kaur1, Parmjit S Panesar, Manab B Bera, Varinder Kaur.   

Abstract

Sequencing of rice genome has facilitated the understanding of rice evolution and has been utilized extensively for mining of DNA markers to facilitate marker-assisted breeding. Simple sequence repeat (SSR) markers that are tandemly repeated nucleotide sequence motifs flanked by unique sequences are presently the maker of choice in rice improvement due to their abundance, co-dominant inheritance, high levels of allelic diversity, and simple reproducible assay. The current level of genome coverage by SSR markers in rice is sufficient to employ them for genotype identification and marker-assisted selection in breeding for mapping of genes and quantitative trait loci analysis. This review provides comprehensive information on the mapping and applications of SSR markers in investigation of rice cultivars to study their genetic divergence and marker-assisted selection of important agronomic traits.

Entities:  

Keywords:  Rice cultivars; diversity; markers; quantitative trait loci; simple sequence repeat

Mesh:

Substances:

Year:  2015        PMID: 24915404     DOI: 10.1080/10408398.2011.646363

Source DB:  PubMed          Journal:  Crit Rev Food Sci Nutr        ISSN: 1040-8398            Impact factor:   11.176


  17 in total

1.  An accurate and efficient method for large-scale SSR genotyping and applications.

Authors:  Lun Li; Zhiwei Fang; Junfei Zhou; Hong Chen; Zhangfeng Hu; Lifen Gao; Lihong Chen; Sheng Ren; Hongyu Ma; Long Lu; Weixiong Zhang; Hai Peng
Journal:  Nucleic Acids Res       Date:  2017-06-02       Impact factor: 16.971

2.  Morphological, phytochemical and genetic diversity of threatened Polygonatum verticillatum (L.) All. populations of different altitudes and habitat types in Himalayan region.

Authors:  Renu Suyal; Arun K Jugran; Ranbeer S Rawal; Indra D Bhatt
Journal:  Physiol Mol Biol Plants       Date:  2021-08-12

3.  An Efficient Strategy Combining SSR Markers- and Advanced QTL-seq-driven QTL Mapping Unravels Candidate Genes Regulating Grain Weight in Rice.

Authors:  Anurag Daware; Sweta Das; Rishi Srivastava; Saurabh Badoni; Ashok K Singh; Pinky Agarwal; Swarup K Parida; Akhilesh K Tyagi
Journal:  Front Plant Sci       Date:  2016-10-26       Impact factor: 5.753

4.  Comparative Analysis of Six Lagerstroemia Complete Chloroplast Genomes.

Authors:  Chao Xu; Wenpan Dong; Wenqing Li; Yizeng Lu; Xiaoman Xie; Xiaobai Jin; Jipu Shi; Kaihong He; Zhili Suo
Journal:  Front Plant Sci       Date:  2017-01-19       Impact factor: 5.753

5.  Comparative analysis of the complete chloroplast genomes of seven Populus species: Insights into alternative female parents of Populus tomentosa.

Authors:  Dan Zong; Peihua Gan; Anpei Zhou; Jinyu Li; Zhongli Xie; Anan Duan; Chengzhong He
Journal:  PLoS One       Date:  2019-06-19       Impact factor: 3.240

Review 6.  Rice Genomics: over the Past Two Decades and into the Future.

Authors:  Shuhui Song; Dongmei Tian; Zhang Zhang; Songnian Hu; Jun Yu
Journal:  Genomics Proteomics Bioinformatics       Date:  2019-02-13       Impact factor: 7.691

7.  Genome-Wide Association Study for Traits Related to Plant and Grain Morphology, and Root Architecture in Temperate Rice Accessions.

Authors:  Filippo Biscarini; Paolo Cozzi; Laura Casella; Paolo Riccardi; Alessandra Vattari; Gabriele Orasen; Rosaria Perrini; Gianni Tacconi; Alessandro Tondelli; Chiara Biselli; Luigi Cattivelli; Jennifer Spindel; Susan McCouch; Pamela Abbruscato; Giampiero Valé; Pietro Piffanelli; Raffaella Greco
Journal:  PLoS One       Date:  2016-05-26       Impact factor: 3.240

Review 8.  Plant Metabolomics: An Indispensable System Biology Tool for Plant Science.

Authors:  Jun Hong; Litao Yang; Dabing Zhang; Jianxin Shi
Journal:  Int J Mol Sci       Date:  2016-06-01       Impact factor: 5.923

9.  Comparative Analysis of the Complete Plastid Genome of Five Bupleurum Species and New Insights into DNA Barcoding and Phylogenetic Relationship.

Authors:  Jun Li; Deng-Feng Xie; Xian-Lin Guo; Zhen-Ying Zheng; Xing-Jin He; Song-Dong Zhou
Journal:  Plants (Basel)       Date:  2020-04-22

10.  Comparative Analysis of the Chloroplast Genomes of the Chinese Endemic Genus Urophysa and Their Contribution to Chloroplast Phylogeny and Adaptive Evolution.

Authors:  Deng-Feng Xie; Yan Yu; Yi-Qi Deng; Juan Li; Hai-Ying Liu; Song-Dong Zhou; Xing-Jin He
Journal:  Int J Mol Sci       Date:  2018-06-22       Impact factor: 5.923

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.