Literature DB >> 24915095

Crystallization and preliminary X-ray crystallographic analysis of a bacterial Asn-transamidosome.

Tateki Suzuki1, Keitaro Yamashita1, Yoshikazu Tanaka1, Isao Tanaka1, Min Yao1.   

Abstract

Most canonical aminoacyl-tRNAs are synthesized directly by their cognate aminoacyl-tRNA synthetases (aaRSs), but glutaminyl-tRNA(Gln) and asparaginyl-tRNA(Asn) are synthesized indirectly by two-step processes. These processes are catalyzed by the transamidosome, a large ribonucleoprotein particle composed of GatA, GatB, GatC, aaRS and tRNA. In this study, the Asn-transamidosome from Pseudomonas aeruginosa was reconstructed and crystallized by mixing purified GatCAB complex, AspRS and tRNA(Asn). The crystal of the Asn-transamidosome belonged to space group P2₁, with unit-cell parameters a=93.3, b=186.0, c=287.8 Å, β=93.3°, and diffracted to 3.73 Å resolution. Preliminary X-ray crystallographic analysis showed that the asymmetric unit contained two Asn-transamidosomes, each composed of two GatCABs, one AspRS dimer and two tRNAAsns, indicating that the construction of the current Asn-transamidosome differs from that of Thermus thermophilus.

Entities:  

Keywords:  Asn-tRNAAsn; AspRS; GatCAB; Pseudomonas aeruginosa; aminoacyl-tRNA; transamidosome

Mesh:

Substances:

Year:  2014        PMID: 24915095      PMCID: PMC4051539          DOI: 10.1107/S2053230X14007274

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


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2.  tRNA-dependent asparagine formation.

Authors:  A W Curnow; M Ibba; D Söll
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5.  Transfer RNA as a cofactor coupling amino acid synthesis with that of protein.

Authors:  M Wilcox; M Nirenberg
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6.  Solvent content of protein crystals.

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7.  Synthesis of aspartyl-tRNA(Asp) in Escherichia coli--a snapshot of the second step.

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