Literature DB >> 15333956

CLIMS: crystallography laboratory information management system.

Kate F Fulton1, Shaun Ervine, Noel Faux, Richard Forster, Rachel A Jodun, Wayson Ly, Lee Robilliard, Jai Sonsini, Dan Whelan, James C Whisstock, Ashley M Buckle.   

Abstract

Macromolecular crystallography requires simple yet effective means of organizing and managing the large amounts of data generated by crystallization experiments. There are several freely available web-based Laboratory Information Management Systems (LIMS) that assist in these tasks. These, however, rely on the limited user interfaces allowed in HTML-based web pages. To address this limitation, a new LIMS for protein crystallization, which features a novel rich graphical user interface (GUI) to a relational database, has been developed. This application, which is called CLIMS (Crystallography LIMS), assists in all aspects of protein-crystallization projects: protein expression, handling, crystallization optimization, visualization of results and preliminary diffraction data. Extensive use of templates, particularly for commercial screens and common optimization grid screens, exploits the redundancy in experimental setups. The crystallization tray is the central focus of the graphical interface, thus facilitating rapid visualization and annotation of results. CLIMS was developed specifically to cater for the needs of individual laboratories requiring an intuitive and robust system for managing crystallization experiments and is freely available.

Mesh:

Year:  2004        PMID: 15333956     DOI: 10.1107/S0907444904017615

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  3 in total

1.  Automation in biological crystallization.

Authors:  Patrick Shaw Stewart; Jochen Mueller-Dieckmann
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-05-28       Impact factor: 1.056

2.  Recording information on protein complexes in an information management system.

Authors:  Marc Savitsky; Jonathan M Diprose; Chris Morris; Susanne L Griffiths; Edward Daniel; Bill Lin; Susan Daenke; Benjamin Bishop; Christian Siebold; Keith S Wilson; Richard Blake; David I Stuart; Robert M Esnouf
Journal:  J Struct Biol       Date:  2011-05-14       Impact factor: 2.867

3.  The Protein Information Management System (PiMS): a generic tool for any structural biology research laboratory.

Authors:  Chris Morris; Anne Pajon; Susanne L Griffiths; Ed Daniel; Marc Savitsky; Bill Lin; Jonathan M Diprose; Alan Wilter da Silva; Katya Pilicheva; Peter Troshin; Johannes van Niekerk; Neil Isaacs; James Naismith; Colin Nave; Richard Blake; Keith S Wilson; David I Stuart; Kim Henrick; Robert M Esnouf
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18
  3 in total

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