Literature DB >> 24913900

Effects of the combined substitutions of amino acid residues on thermal properties of cold-adapted monomeric isocitrate dehydrogenases from psychrophilic bacteria.

Miyuki Kobayashi1, Yasuhiro Takada.   

Abstract

In the two cold-adapted monomeric isocitrate dehydrogenases from psychrophilic bacteria, Colwellia maris and Colwellia psychrerythraea (CmIDH and CpIDH, respectively), the combined substitutions of amino acid residues between the Leu693, Leu724 and Phe735 residues of CmIDH and the corresponding Phe693, Gln724 and Leu735 residues of CpIDH were introduced by site-directed mutagenesis. A double mutant of CmIDH substituted its Leu724 and Phe735 residues by the corresponding ones of CpIDH, CmL724Q/F735L, and the triple mutant of CpIDH, CpF693L/Q724L/L735F, showed the most decrease and increase of activity, respectively, of each wild-type and its all mutated enzymes. In the case of CmIDH, the substitutions of these three amino acid residues resulted in the decrease of catalytic activity and thermostability for activity, but the combined substitutions of amino acid residues did not necessarily exert additive effects on these properties. On the other hand, similar substitutions in CpIDH had quite opposite effects to CmIDH, and the effects of the combined substitutions were additive. All multiple mutants of CmIDH and CpIDH showed lower and higher catalytic efficiency (k(cat)/K(m)) values than the respective wild-type enzymes. Single and multiple mutations of the substituted amino acid residues in the CmIDH and CpIDH led to the increase and decrease of sensitivity to tryptic digestion, indicating that the stability of protein structure was decreased and increased by the mutations, respectively.

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Year:  2014        PMID: 24913900     DOI: 10.1007/s00792-014-0656-7

Source DB:  PubMed          Journal:  Extremophiles        ISSN: 1431-0651            Impact factor:   2.395


  18 in total

1.  Cleavage of structural proteins during the assembly of the head of bacteriophage T4.

Authors:  U K Laemmli
Journal:  Nature       Date:  1970-08-15       Impact factor: 49.962

2.  Cloning, sequencing, and expression of a gene encoding the monomeric isocitrate dehydrogenase of the nitrogen-fixing bacterium, Azotobacter vinelandii.

Authors:  Takehiko Sahara; Yasuhiro Takada; Yoji Takeuchi; Naoto Yamaoka; Noriyuki Fukunaga
Journal:  Biosci Biotechnol Biochem       Date:  2002-03       Impact factor: 2.043

3.  Inactivation of isocitrate dehydrogenase by phosphorylation is mediated by the negative charge of the phosphate.

Authors:  P E Thorsness; D E Koshland
Journal:  J Biol Chem       Date:  1987-08-05       Impact factor: 5.157

4.  Isocitrate dehydrogenase isozymes from a psychrotrophic bacterium, Pseudomonas psychrophila.

Authors:  Shougo Matsuo; Haruna Shirai; Yasuhiro Takada
Journal:  Arch Microbiol       Date:  2010-06-15       Impact factor: 2.552

5.  Analysis of amino acid residues involved in cold activity of monomeric isocitrate dehydrogenase from psychrophilic bacteria, Colwellia maris and Colwellia psychrerythraea.

Authors:  Wataru Yasuda; Miyuki Kobayashi; Yasuhiro Takada
Journal:  J Biosci Bioeng       Date:  2013-07-03       Impact factor: 2.894

6.  Purification and some properties of two NADP+-specific isocitrate dehydrogenases from an obligately psychrophilic marine bacterium, Vibrio sp., strain ABE-1.

Authors:  T Ochiai; N Fukunaga; S Sasaki
Journal:  J Biochem       Date:  1979-08       Impact factor: 3.387

7.  Analysis of the amino acid residues involved in the thermal properties of the monomeric isocitrate dehydrogenases of the psychrophilic bacterium Colwellia maris and the mesophilic bacterium Azotobacter vinelandii.

Authors:  Takayuki Kurihara; Yasuhiro Takada
Journal:  Biosci Biotechnol Biochem       Date:  2012-12-07       Impact factor: 2.043

8.  Assignment of Vibrio sp. strain ABE-1 to Colwellia maris sp. nov., a new psychrophilic bacterium.

Authors:  I Yumoto; K Kawasaki; H Iwata; H Matsuyama; H Okuyama
Journal:  Int J Syst Bacteriol       Date:  1998-10

9.  Vibrio psychroerythrus sp. n.: classification of the psychrophilic marine bacterium, NRC 1004.

Authors:  J Y D'Aoust; D J Kushner
Journal:  J Bacteriol       Date:  1972-08       Impact factor: 3.490

10.  Two phenotypically compensating isocitrate dehydrogenases in Ralstonia eutropha.

Authors:  Zheng-Xiang Wang; Christian Brämer; Alexander Steinbüchel
Journal:  FEMS Microbiol Lett       Date:  2003-10-10       Impact factor: 2.742

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  4 in total

1.  Contribution of Three Different Regions of Isocitrate Dehydrogenases from Psychrophilic and Psychrotolerant Bacteria to Their Thermal Properties.

Authors:  Yuka Mouri; Yasuhiro Takada
Journal:  Curr Microbiol       Date:  2018-08-20       Impact factor: 2.188

2.  NADP+-dependent isocitrate dehydrogenase from a psychrophilic bacterium, Psychromonas marina.

Authors:  Ryo Hirota; Kango Tsubouchi; Yasuhiro Takada
Journal:  Extremophiles       Date:  2017-04-26       Impact factor: 2.395

3.  Effects of the substituted amino acid residues on the thermal properties of monomeric isocitrate dehydrogenases from a psychrophilic bacterium, Psychromonas marina, and a mesophilic bacterium, Azotobacter vinelandii.

Authors:  Kango Tsubouchi; Yasuhiro Takada
Journal:  Extremophiles       Date:  2019-10-08       Impact factor: 2.395

4.  Isocitrate dehydrogenase of Bacillus cereus is involved in biofilm formation.

Authors:  Gang Wang; Linlin Zhao; Qing Liu; Qiubin Huang; Fengying Liu; Huiping Liu
Journal:  World J Microbiol Biotechnol       Date:  2021-11-01       Impact factor: 3.312

  4 in total

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