Literature DB >> 28447265

NADP+-dependent isocitrate dehydrogenase from a psychrophilic bacterium, Psychromonas marina.

Ryo Hirota1, Kango Tsubouchi1, Yasuhiro Takada2.   

Abstract

The gene encoding NADP+-dependent isocitrate dehydrogenase (IDH; EC 1.1.1.42) of a psychrophilic bacterium, Psychromonas marina, was cloned and sequenced. The open reading frame of the gene encoding IDH of P. marina (PmIDH) was 2229 bp in length and corresponded to a polypeptide composed of 742 amino acids. The molecular mass of IDH was calculated as 80,426 Da. The deduced amino acid sequence of PmIDH exhibited high degrees of homology with the monomeric IDH from other bacteria such as Colwellia maris (62% identity) and Azotobacter vinelandii (AvIDH) (64%). His-tagged PmIDH overexpressed in Escherichia coli cells was purified and characterized. The optimum temperature of PmIDH activity was about 35 °C; however, the enzyme lost 74% of the activity after incubation for 10 min at 30 °C, indicating that this enzyme is thermolabile. Chimeric enzymes produced through domain swapping between PmIDH and mesophilic AvIDH were constructed and their optimum temperatures and thermostability were determined. The results suggest that regions 2 and 3, especially region 3, of the two IDHs are involved in their catalytic activities and optimum temperature and thermostability for activity.

Entities:  

Keywords:  Chimeric enzymes; Cold-adapted enzyme; Isocitrate dehydrogenase; Psychromonas marina; Psychrophilic bacterium

Mesh:

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Year:  2017        PMID: 28447265     DOI: 10.1007/s00792-017-0936-0

Source DB:  PubMed          Journal:  Extremophiles        ISSN: 1431-0651            Impact factor:   2.395


  39 in total

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Journal:  Biochemistry       Date:  1990-08-21       Impact factor: 3.162

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Journal:  Science       Date:  1979-08-24       Impact factor: 47.728

Review 3.  Psychrophilic enzymes: a thermodynamic challenge.

Authors:  C Gerday; M Aittaleb; J L Arpigny; E Baise; J P Chessa; G Garsoux; I Petrescu; G Feller
Journal:  Biochim Biophys Acta       Date:  1997-10-17

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Authors:  P E Thorsness; D E Koshland
Journal:  J Biol Chem       Date:  1987-08-05       Impact factor: 5.157

5.  Isocitrate dehydrogenase isozymes from a psychrotrophic bacterium, Pseudomonas psychrophila.

Authors:  Shougo Matsuo; Haruna Shirai; Yasuhiro Takada
Journal:  Arch Microbiol       Date:  2010-06-15       Impact factor: 2.552

6.  Purification and some properties of two NADP+-specific isocitrate dehydrogenases from an obligately psychrophilic marine bacterium, Vibrio sp., strain ABE-1.

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Journal:  J Biochem       Date:  1979-08       Impact factor: 3.387

7.  Assignment of Vibrio sp. strain ABE-1 to Colwellia maris sp. nov., a new psychrophilic bacterium.

Authors:  I Yumoto; K Kawasaki; H Iwata; H Matsuyama; H Okuyama
Journal:  Int J Syst Bacteriol       Date:  1998-10

8.  Two phenotypically compensating isocitrate dehydrogenases in Ralstonia eutropha.

Authors:  Zheng-Xiang Wang; Christian Brämer; Alexander Steinbüchel
Journal:  FEMS Microbiol Lett       Date:  2003-10-10       Impact factor: 2.742

9.  Psychromonas marina sp. nov., a novel halophilic, facultatively psychrophilic bacterium isolated from the coast of the Okhotsk Sea.

Authors:  Kosei Kawasaki; Yuichi Nogi; Megumi Hishinuma; Yoshinobu Nodasaka; Hidetoshi Matsuyama; Isao Yumoto
Journal:  Int J Syst Evol Microbiol       Date:  2002-09       Impact factor: 2.747

10.  Cloning, sequence analysis, expression, and inactivation of the Corynebacterium glutamicum icd gene encoding isocitrate dehydrogenase and biochemical characterization of the enzyme.

Authors:  B J Eikmanns; D Rittmann; H Sahm
Journal:  J Bacteriol       Date:  1995-02       Impact factor: 3.490

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  3 in total

1.  Effects of the substituted amino acid residues on the thermal properties of monomeric isocitrate dehydrogenases from a psychrophilic bacterium, Psychromonas marina, and a mesophilic bacterium, Azotobacter vinelandii.

Authors:  Kango Tsubouchi; Yasuhiro Takada
Journal:  Extremophiles       Date:  2019-10-08       Impact factor: 2.395

2.  Biochemical and phylogenetic characterization of a monomeric isocitrate dehydrogenase from a marine methanogenic archaeon Methanococcoides methylutens.

Authors:  Peng Wang; Yuan Wang; Xiuxiu Guo; Shiping Huang; Guoping Zhu
Journal:  Extremophiles       Date:  2020-01-22       Impact factor: 2.395

3.  Biochemical and Phylogenetic Characterization of a Novel NADP+-Specific Isocitrate Dehydrogenase From the Marine Microalga Phaeodactylum tricornutum.

Authors:  Shiping Huang; Jiaxin Zhao; Wenjing Li; Peng Wang; Zhenglian Xue; Guoping Zhu
Journal:  Front Mol Biosci       Date:  2021-07-05
  3 in total

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