Literature DB >> 24910485

Cancer diagnosis by nuclear morphometry using spatial information .

Hu Huang1, Akif Burak Tosun1, Jia Guo1, Cheng Chen1, Wei Wang1, John A Ozolek2, Gustavo K Rohde3.   

Abstract

Methods for extracting quantitative information regarding nuclear morphology from histopathology images have been long used to aid pathologists in determining the degree of differentiation in numerous malignancies. Most methods currently in use, however, employ the naïve Bayes approach to classify a set of nuclear measurements extracted from one patient. Hence, the statistical dependency between the samples (nuclear measurements) is often not directly taken into account. Here we describe a method that makes use of statistical dependency between samples in thyroid tissue to improve patient classification accuracies with respect to standard naïve Bayes approaches. We report results in two sample diagnostic challenges.

Entities:  

Keywords:  Cancer diagnosis; Majority voting; Naïve Bayes; Set classification; Thyroid lesion classification

Year:  2014        PMID: 24910485      PMCID: PMC4043190          DOI: 10.1016/j.patrec.2014.02.008

Source DB:  PubMed          Journal:  Pattern Recognit Lett        ISSN: 0167-8655            Impact factor:   3.756


  19 in total

Review 1.  Nuclear structure in cancer cells.

Authors:  Daniele Zink; Andrew H Fischer; Jeffrey A Nickerson
Journal:  Nat Rev Cancer       Date:  2004-09       Impact factor: 60.716

2.  Graph run-length matrices for histopathological image segmentation.

Authors:  Akif Burak Tosun; Cigdem Gunduz-Demir
Journal:  IEEE Trans Med Imaging       Date:  2010-11-22       Impact factor: 10.048

3.  Improved automatic detection and segmentation of cell nuclei in histopathology images.

Authors:  Yousef Al-Kofahi; Wiem Lassoued; William Lee; Badrinath Roysam
Journal:  IEEE Trans Biomed Eng       Date:  2009-10-30       Impact factor: 4.538

4.  Nuclear roundness variance predicts prostate cancer progression, metastasis, and death: A prospective evaluation with up to 25 years of follow-up after radical prostatectomy.

Authors:  Robert W Veltri; Sumit Isharwal; M Craig Miller; Jonathan I Epstein; Alan W Partin
Journal:  Prostate       Date:  2010-09-01       Impact factor: 4.104

5.  Morphometry in the cytologic evaluation of thyroid follicular lesions.

Authors:  T Nagashima; M Suzuki; M Oshida; H Hashimoto; H Yagata; T Shishikura; K Koda; N Nakajima
Journal:  Cancer       Date:  1998-04-25       Impact factor: 6.860

6.  A decision support system for Crithidia luciliae image classification.

Authors:  Paolo Soda; Leonardo Onofri; Giulio Iannello
Journal:  Artif Intell Med       Date:  2010-07-14       Impact factor: 5.326

Review 7.  Cancer nucleus: morphology and beyond.

Authors:  Pranab Dey
Journal:  Diagn Cytopathol       Date:  2010-05       Impact factor: 1.582

8.  Nuclear-cytoskeletal interactions: evidence for physical connections between the nucleus and cell periphery and their alteration by transformation.

Authors:  K J Pienta; D S Coffey
Journal:  J Cell Biochem       Date:  1992-08       Impact factor: 4.429

9.  A flexible and robust approach for segmenting cell nuclei from 2D microscopy images using supervised learning and template matching.

Authors:  Cheng Chen; Wei Wang; John A Ozolek; Gustavo K Rohde
Journal:  Cytometry A       Date:  2013-04-08       Impact factor: 4.355

10.  A linear optimal transportation framework for quantifying and visualizing variations in sets of images.

Authors:  Wei Wang; Dejan Slepčev; Saurav Basu; John A Ozolek; Gustavo K Rohde
Journal:  Int J Comput Vis       Date:  2013-01-01       Impact factor: 7.410

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  6 in total

Review 1.  Advances in the computational and molecular understanding of the prostate cancer cell nucleus.

Authors:  Neil M Carleton; George Lee; Anant Madabhushi; Robert W Veltri
Journal:  J Cell Biochem       Date:  2018-06-20       Impact factor: 4.429

2.  Machine Learning for Nuclear Mechano-Morphometric Biomarkers in Cancer Diagnosis.

Authors:  Adityanarayanan Radhakrishnan; Karthik Damodaran; Ali C Soylemezoglu; Caroline Uhler; G V Shivashankar
Journal:  Sci Rep       Date:  2017-12-20       Impact factor: 4.379

3.  Detection of malignant mesothelioma using nuclear structure of mesothelial cells in effusion cytology specimens.

Authors:  Akif Burak Tosun; Oleksandr Yergiyev; Soheil Kolouri; Jan F Silverman; Gustavo K Rohde
Journal:  Cytometry A       Date:  2015-01-16       Impact factor: 4.355

4.  Programmed death-ligand 1 expression by digital image analysis advances thyroid cancer diagnosis among encapsulated follicular lesions.

Authors:  Anne M-Y Hsieh; Olena Polyakova; Guodong Fu; Ronald S Chazen; Christina MacMillan; Ian J Witterick; Ranju Ralhan; Paul G Walfish
Journal:  Oncotarget       Date:  2018-04-13

5.  Predictive Nuclear Chromatin Characteristics of Melanoma and Dysplastic Nevi.

Authors:  Matthew G Hanna; Chi Liu; Gustavo K Rohde; Rajendra Singh
Journal:  J Pathol Inform       Date:  2017-04-10

6.  3D Shape Modeling for Cell Nuclear Morphological Analysis and Classification.

Authors:  Alexandr A Kalinin; Ari Allyn-Feuer; Alex Ade; Gordon-Victor Fon; Walter Meixner; David Dilworth; Syed S Husain; Jeffrey R de Wet; Gerald A Higgins; Gen Zheng; Amy Creekmore; John W Wiley; James E Verdone; Robert W Veltri; Kenneth J Pienta; Donald S Coffey; Brian D Athey; Ivo D Dinov
Journal:  Sci Rep       Date:  2018-09-12       Impact factor: 4.379

  6 in total

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