Literature DB >> 24908287

Next generation sequencing in cardiomyopathy: towards personalized genomics and medicine.

Amitabh Biswas1, V R Rao, Sandeep Seth, S K Maulik.   

Abstract

Next generation sequencing (NGS) is perhaps one of the most exciting advances in the field of life sciences and biomedical research in the last decade. With the availability of massive parallel sequencing, human DNA blueprint can be decoded to explore the hidden information with reduced time and cost. This technology has been used to understand the genetic aspects of various diseases including cardiomyopathies. Mutations for different cardiomyopathies have been identified and cataloging mutations on phenotypic basis are underway and are expected to lead to new discoveries that may translate to novel diagnostic, prognostic and therapeutic targets. With ease in handling NGS, cost effectiveness and fast data output, NGS is now considered as a diagnostic tool for cardiomyopathy by providing targeted gene sequencing. In addition to the number of genetic variants that are identified in cardiomyopathies, there is a need of quicker and easy way to screen multiple genes associated with the disease. In this review, an attempt has been made to explain the NGS technology, methods and applications in cardiomyopathies and their perspective in clinical practice and challenges which are to be addressed.

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Year:  2014        PMID: 24908287     DOI: 10.1007/s11033-014-3418-9

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  64 in total

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Authors:  D TEARE
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Review 4.  Next-generation sequencing platforms.

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5.  Contemporary definitions and classification of the cardiomyopathies: an American Heart Association Scientific Statement from the Council on Clinical Cardiology, Heart Failure and Transplantation Committee; Quality of Care and Outcomes Research and Functional Genomics and Translational Biology Interdisciplinary Working Groups; and Council on Epidemiology and Prevention.

Authors:  Barry J Maron; Jeffrey A Towbin; Gaetano Thiene; Charles Antzelevitch; Domenico Corrado; Donna Arnett; Arthur J Moss; Christine E Seidman; James B Young
Journal:  Circulation       Date:  2006-03-27       Impact factor: 29.690

Review 6.  Whole cancer genome sequencing by next-generation methods.

Authors:  Jeffrey S Ross; Maureen Cronin
Journal:  Am J Clin Pathol       Date:  2011-10       Impact factor: 2.493

7.  Sudden deaths in young competitive athletes: analysis of 1866 deaths in the United States, 1980-2006.

Authors:  Barry J Maron; Joseph J Doerer; Tammy S Haas; David M Tierney; Frederick O Mueller
Journal:  Circulation       Date:  2009-02-16       Impact factor: 29.690

8.  Genetic evaluation of cardiomyopathy--a Heart Failure Society of America practice guideline.

Authors:  Ray E Hershberger; Joann Lindenfeld; Luisa Mestroni; Christine E Seidman; Matthew R G Taylor; Jeffrey A Towbin
Journal:  J Card Fail       Date:  2009-03       Impact factor: 5.712

9.  Design and analysis of ChIP-seq experiments for DNA-binding proteins.

Authors:  Peter V Kharchenko; Michael Y Tolstorukov; Peter J Park
Journal:  Nat Biotechnol       Date:  2008-11-16       Impact factor: 54.908

10.  Diverse spectrum of rare deafness genes underlies early-childhood hearing loss in Japanese patients: a cross-sectional, multi-center next-generation sequencing study.

Authors:  Hideki Mutai; Naohiro Suzuki; Atsushi Shimizu; Chiharu Torii; Kazunori Namba; Noriko Morimoto; Jun Kudoh; Kimitaka Kaga; Kenjiro Kosaki; Tatsuo Matsunaga
Journal:  Orphanet J Rare Dis       Date:  2013-10-28       Impact factor: 4.123

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  2 in total

Review 1.  Epidemiology of cardiovascular disease: recent novel outlooks on risk factors and clinical approaches.

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Journal:  Expert Rev Cardiovasc Ther       Date:  2016-04-25

2.  Targeted next-generation sequencing of candidate genes reveals novel mutations in patients with dilated cardiomyopathy.

Authors:  Yue Zhao; Yue Feng; Yun-Mei Zhang; Xiao-Xue Ding; Yu-Zhu Song; A-Mei Zhang; Li Liu; Hong Zhang; Jia-Huan Ding; Xue-Shan Xia
Journal:  Int J Mol Med       Date:  2015-10-07       Impact factor: 4.101

  2 in total

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