Literature DB >> 24906331

Analysis of replication timing using synchronized budding yeast cultures.

Jie Peng1, M K Raghuraman, Wenyi Feng.   

Abstract

Eukaryotic DNA replication exhibits at once extraordinary fidelity and substantial plasticity. The importance of the apparent presence of a replication temporal program on a population level has been the subject of intense debate of late. Such debate has been, to a great extent, facilitated by methods that permit the description and analysis of replication dynamics in various model organisms, both globally and at a single-molecule level. Each of these methods provides a unique view of the replication process, and also presents challenges and questions in the interpretation of experimental observations. Thus, wider applications of these methods in different genetic backgrounds and in different organisms would doubtless enable us to better understand the execution and regulation of chromosomal DNA synthesis as well as its impact on genome maintenance.

Entities:  

Mesh:

Substances:

Year:  2014        PMID: 24906331      PMCID: PMC4338859          DOI: 10.1007/978-1-4939-0888-2_26

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  26 in total

Review 1.  Eukaryotic chromosome DNA replication: where, when, and how?

Authors:  Hisao Masai; Seiji Matsumoto; Zhiying You; Naoko Yoshizawa-Sugata; Masako Oda
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

Review 2.  Eukaryotic DNA replication origins: many choices for appropriate answers.

Authors:  Marcel Méchali
Journal:  Nat Rev Mol Cell Biol       Date:  2010-10       Impact factor: 94.444

3.  Reprogramming of DNA replication timing.

Authors:  Yoel Shufaro; Orly Lacham-Kaplan; Ben-Zion Tzuberi; John McLaughlin; Alan Trounson; Howard Cedar; Benjamin E Reubinoff
Journal:  Stem Cells       Date:  2010-03-31       Impact factor: 6.277

4.  The temporal program of chromosome replication: genomewide replication in clb5{Delta} Saccharomyces cerevisiae.

Authors:  Heather J McCune; Laura S Danielson; Gina M Alvino; David Collingwood; Jeffrey J Delrow; Walton L Fangman; Bonita J Brewer; M K Raghuraman
Journal:  Genetics       Date:  2008-10-01       Impact factor: 4.562

Review 5.  Evaluating genome-scale approaches to eukaryotic DNA replication.

Authors:  David M Gilbert
Journal:  Nat Rev Genet       Date:  2010-09-01       Impact factor: 53.242

6.  Genome-wide dynamics of replication timing revealed by in vitro models of mouse embryogenesis.

Authors:  Ichiro Hiratani; Tyrone Ryba; Mari Itoh; Joy Rathjen; Michael Kulik; Bernadett Papp; Eden Fussner; David P Bazett-Jones; Kathrin Plath; Stephen Dalton; Peter D Rathjen; David M Gilbert
Journal:  Genome Res       Date:  2009-12-01       Impact factor: 9.043

7.  Comparative analysis of DNA replication timing reveals conserved large-scale chromosomal architecture.

Authors:  Eitan Yaffe; Shlomit Farkash-Amar; Andreas Polten; Zohar Yakhini; Amos Tanay; Itamar Simon
Journal:  PLoS Genet       Date:  2010-07-01       Impact factor: 5.917

8.  Genome-wide replication profiles indicate an expansive role for Rpd3L in regulating replication initiation timing or efficiency, and reveal genomic loci of Rpd3 function in Saccharomyces cerevisiae.

Authors:  Simon R V Knott; Christopher J Viggiani; Simon Tavaré; Oscar M Aparicio
Journal:  Genes Dev       Date:  2009-05-01       Impact factor: 11.361

9.  The effect of Ku on telomere replication time is mediated by telomere length but is independent of histone tail acetylation.

Authors:  Hui-Yong Lian; E Douglas Robertson; Shin-ichiro Hiraga; Gina M Alvino; David Collingwood; Heather J McCune; Akila Sridhar; Bonita J Brewer; M K Raghuraman; Anne D Donaldson
Journal:  Mol Biol Cell       Date:  2011-03-25       Impact factor: 4.138

10.  Replication timing: a fingerprint for cell identity and pluripotency.

Authors:  Tyrone Ryba; Ichiro Hiratani; Takayo Sasaki; Dana Battaglia; Michael Kulik; Jinfeng Zhang; Stephen Dalton; David M Gilbert
Journal:  PLoS Comput Biol       Date:  2011-10-20       Impact factor: 4.475

View more
  1 in total

1.  Incision of damaged DNA in the presence of an impaired Smc5/6 complex imperils genome stability.

Authors:  Jie Peng; Wenyi Feng
Journal:  Nucleic Acids Res       Date:  2016-08-17       Impact factor: 16.971

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.