Literature DB >> 24905165

Long noncoding RNAs in cell-fate programming and reprogramming.

Ryan A Flynn1, Howard Y Chang2.   

Abstract

In recent years, long noncoding RNAs (lncRNAs) have emerged as an important class of regulators of gene expression. lncRNAs exhibit several distinctive features that confer unique regulatory functions, including exquisite cell- and tissue-specific expression and the capacity to transduce higher-order spatial information. Here we review evidence showing that lncRNAs exert critical functions in adult tissue stem cells, including skin, brain, and muscle, as well as in developmental patterning and pluripotency. We highlight new approaches for ascribing lncRNA functions and discuss mammalian dosage compensation as a classic example of an lncRNA network coupled to stem cell differentiation.
Copyright © 2014 Elsevier Inc. All rights reserved.

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Year:  2014        PMID: 24905165      PMCID: PMC4120821          DOI: 10.1016/j.stem.2014.05.014

Source DB:  PubMed          Journal:  Cell Stem Cell        ISSN: 1875-9777            Impact factor:   24.633


  78 in total

1.  Jpx RNA activates Xist by evicting CTCF.

Authors:  Sha Sun; Brian C Del Rosario; Attila Szanto; Yuya Ogawa; Yesu Jeon; Jeannie T Lee
Journal:  Cell       Date:  2013-06-20       Impact factor: 41.582

2.  Endogenous miRNA sponge lincRNA-RoR regulates Oct4, Nanog, and Sox2 in human embryonic stem cell self-renewal.

Authors:  Yue Wang; Zhenyu Xu; Junfeng Jiang; Chen Xu; Jiuhong Kang; Lei Xiao; Minjuan Wu; Jun Xiong; Xiaocan Guo; Houqi Liu
Journal:  Dev Cell       Date:  2013-03-28       Impact factor: 12.270

3.  The noncoding RNA Mistral activates Hoxa6 and Hoxa7 expression and stem cell differentiation by recruiting MLL1 to chromatin.

Authors:  Stéphane Bertani; Silvia Sauer; Eugene Bolotin; Frank Sauer
Journal:  Mol Cell       Date:  2011-09-16       Impact factor: 17.970

4.  Targeted RNA sequencing reveals the deep complexity of the human transcriptome.

Authors:  Tim R Mercer; Daniel J Gerhardt; Marcel E Dinger; Joanna Crawford; Cole Trapnell; Jeffrey A Jeddeloh; John S Mattick; John L Rinn
Journal:  Nat Biotechnol       Date:  2011-11-13       Impact factor: 54.908

5.  Production of de novo cardiomyocytes: human pluripotent stem cell differentiation and direct reprogramming.

Authors:  Paul W Burridge; Gordon Keller; Joseph D Gold; Joseph C Wu
Journal:  Cell Stem Cell       Date:  2012-01-06       Impact factor: 24.633

Review 6.  Noncoding RNAs in Long-Term Memory Formation.

Authors:  Tim R Mercer; Marcel E Dinger; Jean Mariani; Kenneth S Kosik; Mark F Mehler; John S Mattick
Journal:  Neuroscientist       Date:  2008-10       Impact factor: 7.519

Review 7.  The multilayered complexity of ceRNA crosstalk and competition.

Authors:  Yvonne Tay; John Rinn; Pier Paolo Pandolfi
Journal:  Nature       Date:  2014-01-16       Impact factor: 49.962

8.  Jarid2/Jumonji coordinates control of PRC2 enzymatic activity and target gene occupancy in pluripotent cells.

Authors:  Jamy C Peng; Anton Valouev; Tomek Swigut; Junmei Zhang; Yingming Zhao; Arend Sidow; Joanna Wysocka
Journal:  Cell       Date:  2009-12-24       Impact factor: 41.582

9.  The long noncoding RNA, Jpx, is a molecular switch for X chromosome inactivation.

Authors:  Di Tian; Sha Sun; Jeannie T Lee
Journal:  Cell       Date:  2010-10-29       Impact factor: 41.582

10.  PRC2 binds active promoters and contacts nascent RNAs in embryonic stem cells.

Authors:  Syuzo Kaneko; Jinsook Son; Steven S Shen; Danny Reinberg; Roberto Bonasio
Journal:  Nat Struct Mol Biol       Date:  2013-10-20       Impact factor: 15.369

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  228 in total

Review 1.  Epigenesis and plasticity of mouse trophoblast stem cells.

Authors:  Julie Prudhomme; Céline Morey
Journal:  Cell Mol Life Sci       Date:  2015-11-05       Impact factor: 9.261

Review 2.  Unique features of long non-coding RNA biogenesis and function.

Authors:  Jeffrey J Quinn; Howard Y Chang
Journal:  Nat Rev Genet       Date:  2016-01       Impact factor: 53.242

3.  Signaling involved in stem cell reprogramming and differentiation.

Authors:  Shihori Tanabe
Journal:  World J Stem Cells       Date:  2015-08-26       Impact factor: 5.326

4.  MiR-146a promotes the asymmetric division and inhibits the self-renewal ability of breast cancer stem-like cells via indirect upregulation of Let-7.

Authors:  Rui Liang; Yuan Li; Meng Wang; Shou-Ching Tang; Guodong Xiao; Xin Sun; Gang Li; Ning Du; Dapeng Liu; Hong Ren
Journal:  Cell Cycle       Date:  2018-07-14       Impact factor: 4.534

Review 5.  Long Noncoding RNAs: At the Intersection of Cancer and Chromatin Biology.

Authors:  Adam M Schmitt; Howard Y Chang
Journal:  Cold Spring Harb Perspect Med       Date:  2017-07-05       Impact factor: 6.915

6.  Transcriptomic analysis to affirm the regulatory role of long non-coding RNA in horn cancer of Indian zebu cattle breed Kankrej (Bos indicus).

Authors:  Pritesh H Sabara; Subhash J Jakhesara; Ketankumar J Panchal; Chaitanya G Joshi; Prakash G Koringa
Journal:  Funct Integr Genomics       Date:  2019-07-31       Impact factor: 3.410

7.  Tissue-specific epigenetics in gene neighborhoods: myogenic transcription factor genes.

Authors:  Sruti Chandra; Jolyon Terragni; Guoqiang Zhang; Sriharsa Pradhan; Stephen Haushka; Douglas Johnston; Carl Baribault; Michelle Lacey; Melanie Ehrlich
Journal:  Hum Mol Genet       Date:  2015-06-03       Impact factor: 6.150

Review 8.  Mechanisms underlying the formation of induced pluripotent stem cells.

Authors:  Federico González; Danwei Huangfu
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2015-09-18       Impact factor: 5.814

Review 9.  Linking diabetic vascular complications with LncRNAs.

Authors:  Amy Leung; Vishnu Amaram; Rama Natarajan
Journal:  Vascul Pharmacol       Date:  2018-02-03       Impact factor: 5.773

10.  Exosomal lncRNAs as new players in cell-to-cell communication.

Authors:  Mihnea Dragomir; Baoqing Chen; George A Calin
Journal:  Transl Cancer Res       Date:  2018-03       Impact factor: 1.241

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