Literature DB >> 24904158

Structural basis for a pH-sensitive calcium leak across membranes.

Yanqi Chang1, Renato Bruni1, Brian Kloss1, Zahra Assur2, Edda Kloppmann3, Burkhard Rost3, Wayne A Hendrickson4, Qun Liu5.   

Abstract

Calcium homeostasis balances passive calcium leak and active calcium uptake. Human Bax inhibitor-1 (hBI-1) is an antiapoptotic protein that mediates a calcium leak and is representative of a highly conserved and widely distributed family, the transmembrane Bax inhibitor motif (TMBIM) proteins. Here, we present crystal structures of a bacterial homolog and characterize its calcium leak activity. The structure has a seven-transmembrane-helix fold that features two triple-helix sandwiches wrapped around a central C-terminal helix. Structures obtained in closed and open conformations are reversibly interconvertible by change of pH. A hydrogen-bonded, pKa (where Ka is the acid dissociation constant)-perturbed pair of conserved aspartate residues explains the pH dependence of this transition, and biochemical studies show that pH regulates calcium influx in proteoliposomes. Homology models for hBI-1 provide insights into TMBIM-mediated calcium leak and cytoprotective activity.
Copyright © 2014, American Association for the Advancement of Science.

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Year:  2014        PMID: 24904158      PMCID: PMC4119810          DOI: 10.1126/science.1252043

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  40 in total

1.  The Calpha ---H...O hydrogen bond: a determinant of stability and specificity in transmembrane helix interactions.

Authors:  A Senes; I Ubarretxena-Belandia; D M Engelman
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-31       Impact factor: 11.205

Review 2.  Regulation of cell death: the calcium-apoptosis link.

Authors:  Sten Orrenius; Boris Zhivotovsky; Pierluigi Nicotera
Journal:  Nat Rev Mol Cell Biol       Date:  2003-07       Impact factor: 94.444

3.  BI-1 protects cells from oxygen glucose deprivation by reducing the calcium content of the endoplasmic reticulum.

Authors:  B C Westphalen; J Wessig; F Leypoldt; S Arnold; A Methner
Journal:  Cell Death Differ       Date:  2005-03       Impact factor: 15.828

4.  The C terminus of Bax inhibitor-1 forms a Ca2+-permeable channel pore.

Authors:  Geert Bultynck; Santeri Kiviluoto; Nadine Henke; Hristina Ivanova; Lars Schneider; Volodymyr Rybalchenko; Tomas Luyten; Koen Nuyts; Wim De Borggraeve; Ilya Bezprozvanny; Jan B Parys; Humbert De Smedt; Ludwig Missiaen; Axel Methner
Journal:  J Biol Chem       Date:  2011-11-28       Impact factor: 5.157

5.  Expression and functional analysis of Bax inhibitor-1 in human breast cancer cells.

Authors:  Michal Grzmil; Silke Kaulfuss; Paul Thelen; Bernhard Hemmerlein; Stefan Schweyer; Silvia Obenauer; Tae Won Kang; Peter Burfeind
Journal:  J Pathol       Date:  2006-02       Impact factor: 7.996

6.  Bax Inhibitor-1 Is a pH-dependent regulator of Ca2+ channel activity in the endoplasmic reticulum.

Authors:  Hyung-Ryong Kim; Geum-Hwa Lee; Ki-Chan Ha; Taeho Ahn; Ji-Yong Moon; Bong-Jin Lee; Ssang-Goo Cho; Sanguk Kim; Young-Rok Seo; Yong-Joo Shin; Soo-Wan Chae; John C Reed; Han-Jung Chae
Journal:  J Biol Chem       Date:  2008-03-31       Impact factor: 5.157

7.  Bax inhibitor-1, a mammalian apoptosis suppressor identified by functional screening in yeast.

Authors:  Q Xu; J C Reed
Journal:  Mol Cell       Date:  1998-02       Impact factor: 17.970

8.  BAX and BAK regulation of endoplasmic reticulum Ca2+: a control point for apoptosis.

Authors:  Luca Scorrano; Scott A Oakes; Joseph T Opferman; Emily H Cheng; Mia D Sorcinelli; Tullio Pozzan; Stanley J Korsmeyer
Journal:  Science       Date:  2003-03-06       Impact factor: 47.728

9.  The Pfam protein families database.

Authors:  Marco Punta; Penny C Coggill; Ruth Y Eberhardt; Jaina Mistry; John Tate; Chris Boursnell; Ningze Pang; Kristoffer Forslund; Goran Ceric; Jody Clements; Andreas Heger; Liisa Holm; Erik L L Sonnhammer; Sean R Eddy; Alex Bateman; Robert D Finn
Journal:  Nucleic Acids Res       Date:  2011-11-29       Impact factor: 16.971

10.  Structural basis for alternating access of a eukaryotic calcium/proton exchanger.

Authors:  Andrew B Waight; Bjørn Panyella Pedersen; Avner Schlessinger; Massimiliano Bonomi; Bryant H Chau; Zygy Roe-Zurz; Aaron J Risenmay; Andrej Sali; Robert M Stroud
Journal:  Nature       Date:  2013-05-19       Impact factor: 49.962

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  39 in total

1.  Context-dependent GluN2B-selective inhibitors of NMDA receptor function are neuroprotective with minimal side effects.

Authors:  Hongjie Yuan; Scott J Myers; Gordon Wells; Katherine L Nicholson; Sharon A Swanger; Polina Lyuboslavsky; Yesim A Tahirovic; David S Menaldino; Thota Ganesh; Lawrence J Wilson; Dennis C Liotta; James P Snyder; Stephen F Traynelis
Journal:  Neuron       Date:  2015-02-26       Impact factor: 17.173

2.  Ion and pH Sensitivity of a TMBIM Ca2+ Channel.

Authors:  Gongrui Guo; Min Xu; Yanqi Chang; Tomas Luyten; Bruno Seitaj; Wu Liu; Ping Zhu; Geert Bultynck; Lei Shi; Matthias Quick; Qun Liu
Journal:  Structure       Date:  2019-03-28       Impact factor: 5.006

3.  Human cytomegalovirus US21 protein is a viroporin that modulates calcium homeostasis and protects cells against apoptosis.

Authors:  Anna Luganini; Giovanna Di Nardo; Luca Munaron; Gianfranco Gilardi; Alessandra Fiorio Pla; Giorgio Gribaudo
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-10       Impact factor: 11.205

Review 4.  BCL-2 family: integrating stress responses at the ER to control cell demise.

Authors:  Philippe Pihán; Amado Carreras-Sureda; Claudio Hetz
Journal:  Cell Death Differ       Date:  2017-06-16       Impact factor: 15.828

5.  BAX inhibitor-1 is a Ca(2+) channel critically important for immune cell function and survival.

Authors:  D Lisak; T Schacht; A Gawlitza; P Albrecht; O Aktas; B Koop; M Gliem; H H Hofstetter; K Zanger; G Bultynck; J B Parys; H De Smedt; T Kindler; P Adams-Quack; M Hahn; A Waisman; J C Reed; N Hövelmeyer; A Methner
Journal:  Cell Death Differ       Date:  2015-10-16       Impact factor: 15.828

Review 6.  TMBIM-mediated Ca2+ homeostasis and cell death.

Authors:  Qun Liu
Journal:  Biochim Biophys Acta Mol Cell Res       Date:  2017-01-05       Impact factor: 4.739

7.  Multi-crystal native SAD analysis at 6 keV.

Authors:  Qun Liu; Youzhong Guo; Yanqi Chang; Zheng Cai; Zahra Assur; Filippo Mancia; Mark I Greene; Wayne A Hendrickson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-09-30

Review 8.  BAX inhibitor-1: between stress and survival.

Authors:  Cynthia Lebeaupin; Marina Blanc; Déborah Vallée; Harald Keller; Béatrice Bailly-Maitre
Journal:  FEBS J       Date:  2020-01-08       Impact factor: 5.542

Review 9.  Crystallographic phasing from weak anomalous signals.

Authors:  Qun Liu; Wayne A Hendrickson
Journal:  Curr Opin Struct Biol       Date:  2015-09-30       Impact factor: 6.809

10.  Structure and regulation of the BsYetJ calcium channel in lipid nanodiscs.

Authors:  Chieh-Chin Li; Te-Yu Kao; Chu-Chun Cheng; Yun-Wei Chiang
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-18       Impact factor: 11.205

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