| Literature DB >> 24902858 |
Sirjana Shrestha1, Sheng-Da Hsu, Wei-Yun Huang, Hsi-Yuan Huang, WenLiang Chen, Shun-Long Weng, Hsien-Da Huang.
Abstract
Gastric cancer (GC) is the second leading cause of global cancer mortality. Most GC patients are diagnosed with advanced-stage disease and show extremely poor prognosis. All of the GC research has a common interest to search for the specific and sensitive biomarkers for early diagnosis of GC. Number of microRNAs play important role in GC. We carried out a systematic review of published miRNA profiling studies that compared the miRNA expression profiles between GC tissues and paired noncancerous gastric tissue. A vote-counting strategy was followed with the collection of information like total number of studies reporting differential expression of miRNA, total number of tissue samples used in the studies, direction of differential expression and fold change. A total of 352 differentially expressed microRNAs were reported in the 14 microRNA expression profiling studies that compared GC tissues with normal tissues with 120 microRNAs reported at least in two studies. In the group of consistently reported microRNAs, miR-21 was reported upregulated in 10 studies followed by miR-25, miR-92, and miR-223 upregulated in eight studies. MiR-375 and miR-148a were found downregulated in six and five studies, respectively, followed by miR-638 in four studies. MiR-107 and miR-103 were reported in nine and eight studies, respectively, but their expression were inconsistent. From this study, the most consistently reported upregulated microRNA was found to be miR-21. This systematic review study of human GC microRNA expression profiling studies would provide information on microRNAs with potential role as the biomarkers in gastric cancer.Entities:
Keywords: Biomarker; gastric cancer; miRNA target genes; microRNA
Mesh:
Substances:
Year: 2014 PMID: 24902858 PMCID: PMC4303155 DOI: 10.1002/cam4.246
Source DB: PubMed Journal: Cancer Med ISSN: 2045-7634 Impact factor: 4.452
Figure 1System flowchart for systematic review.
Characteristics of miRNA datasets in human gastric cancer.
| Dataset | Year | Region | Tumor type | No. of samples (cancer/normal) | Platform (manufacturer) | Total miRNA | Differentially expressed miRNAs | |||
|---|---|---|---|---|---|---|---|---|---|---|
| Criteria | Up | Down | Total | |||||||
| Carvalho | 2012 | Netherlands | GCI | 47 (37/10) | miRNAChip_human_v2 (National DNA-Microarray Facility, University of Aveiro, Portugal) | 703 | 5 | 5 | 70 | |
| Kim | 2011 | Korea | GCI, GCD | 124 (90/34) | LMT miRNA microarray (Agilent technologies) | 1667 | 62 | 63 | 125 | |
| Li | 2011 | China | GCI | 12 (6/6) | miRCURY Array LNA microRNA Chip (v.14.0) (Exiqon) | 904 | 40 | 36 | 76 | |
| Li | 2011 | China | NR | 20 (10/10) | TaqMan Human miRNA Array v1.0 (Applied Biosystems) | 365 | 16 | 6 | 22 | |
| Oh | 2011 | Singapore | GCI, GCD | 80 (40/40) | Agilent Human miRNA Microarrays (V2, Agilent) | 723 | FDR < 0.01 | 40 | 40 | 146 |
| Tchernitsa | 2010 | Germany | GCI | 12 (6/6) | NCode TM MultiSpecies miRNA Microarray V1 (Invitrogen) | 373 | Significance of class comparison = 0.05 | 20 | 2 | 22 |
| Ding | 2010 | China | GCI, GCD | 12 (6/6) | NR | 8 | 7 | 15 | ||
| Tsukamoto | 2010 | Japan | GCI, GCD | 27 (22/5) | G4470A Human MiRNA Microarray (Agilent technologies) | 470 | 33 | 6 | 102 | |
| Ueda | 2010 | Japan | GCI, GCD | 353 (184/169) | microRNA microarray chip (OSU_CCC version 3.0, ArrayExpress) | 326 | 22 | 13 | 35 | |
| Yao | 2009 | China | NR | 6 (3/3) | miRCURY LNA microarray Array(v.11.0) (Exiqon) | 847 | FC > 2 | 59 | 46 | 326 |
| Luo | 2009 | China | NR | 27 (24/3) | NR | 328 | 7 | 19 | 26 | |
| Liu | 2009 | China | NR | 8 (4/4) | microRNA Microarray (Packard Biochip Technologies ScanArray Express microarray) | 243 | 4 | 5 | 9 | |
| Petrocca | 2008 | Italy | GCI | 40 (20/20) | second generation miRNA microarray chips (V2)(Amersham BioScience Codelink) | 250 | Significance analysis of microarray (SAM) | 14 | 5 | 19 |
| Volinia | 2006 | USA | NR | 41 (20/21) | miRNA microarray (Amersham BioScience Codelink) | 190 | FDR = 0.06 | 22 | 6 | 28 |
Only top most miRNAs selected.
miRNAs above with raw signal above 500 selected 21.
miRNAs over twofold change provided (GCI, gastric cancer intestinal; GCD, gastric cancer diffuse, NR, not reported).
Consistently reported upregulated miRNAs in profiling studies (gastric cancer tissue vs. normal).
| miRNA | Reference | No. of tissue sample (cancer/normal) | miRNA family | Fold change | Median fold change |
|---|---|---|---|---|---|
| miR-21 | 10 | 721 (404/317) | mir-21 | 1.49–10.44 | 4.05 |
| miR-25 | 8 | 629 (358/271) | mir-25 | 1.26–5.57 | 2.55 |
| miR-92 | 8 | 629 (358/271) | mir-25 | 1.39–5.24 | 2.80 |
| miR-223 | 8 | 350 (211/139) | mir-223 | 2.13–4.90 | 3.13 |
| miR-106b | 7 | 574 (331/243) | mir-17 | 1.60–4.30 | 2.00 |
| miR-106a | 7 | 574 (331/243) | mir-17 | 1.52–9.02 | 2.80 |
| miR-18a | 6 | 602 (345/257) | mir-17 | 1.70–10.66 | 2.27 |
| miR-93 | 6 | 568 (328/240) | mir-17 | 1.49–8.27 | 2.40 |
| miR-17 | 6 | 562 (325/237) | mir-17 | 1.61–9.01 | 3.08 |
| miR-23a | 5 | 176 (96/80) | mir-23 | — | 2.89 |
| miR-191 | 5 | 546 (308/238) | mir-191 | 1.27–1.30 | 1.28 |
| miR-19a | 5 | 596 (342/254) | mir-19 | 1.50–7.80 | 3.99 |
| miR-20a | 5 | 596 (342/254) | mir-17 | 1.35–17.74 | 4.71 |
| miR-27a | 5 | 139 (78/61) | mir-27a | 2.96–4.72 | 3.32 |
| miR-214 | 5 | 165 (82/83) | mir-214 | 2.11–2.85 | 2.48 |
| miR-100 | 4 | 107 (53/54) | mir-10 | 2.10–2.17 | 2.13 |
| miR-20b | 4 | 516 (302/214) | mir-17 | 1.28–6.84 | 1.84 |
| miR-425-5p | 3 | 504 (296/208) | mir-425 | 1.35–5.27 | 2.20 |
| miR-7 | 3 | 80 (48/32) | mir-7 | 3.11–4.68 | 3.89 |
| miR-215 | 3 | 148 (82/66) | mir-192 | – | 3.78 |
| miR-135b | 3 | 557 (314/243) | mir-135 | 1.59–1.60 | 1.59 |
| miR-224 | 3 | 557 (314/243) | mir-224 | 2.20–3.85 | 3.02 |
| miR-192 | 3 | 148 (82/66) | mir-192 | – | 3.74 |
| miR-221 | 3 | 101 (50/51) | mir-221 | – | 2.40 |
| miR-18b | 3 | 216 (136/80) | mir-17 | 2.17–5.01 | 3.59 |
| miR-200b | 3 | 119 (68/51) | mir-8 | 2.40–2.57 | 2.48 |
| miR-194 | 2 | 39 (28/11) | mir-194 | 2.13–5.16 | 3.64 |
| miR-99b | 2 | 47 (23/24) | mir-10 | – | 2.18 |
| miR-10a | 2 | 33 (25/8) | mir-10 | 2.49–4.77 | 3.63 |
| miR-15a | 2 | 107 (62/45) | mir-15 | – | 2.32 |
| miR-199-5p | 2 | 86 (43/43) | mir-199 | – | 2.98 |
| miR-301 | 2 | 204 (130/74) | mir-130 | – | 1.82 |
| miR-519d | 2 | 130 (93/37) | mir-515 | 1.59–2.57 | 2.08 |
| let-7i | 2 | 204 (130/74) | let-7 | – | 1.20 |
| miR-181d | 2 | 477 (274/203) | mir-181 | 1.16–2.30 | 1.73 |
| miR-185 | 2 | 130 (93/37) | mir-185 | 1.32–2.20 | 1.76 |
| miR-181a | 2 | 477 (274/203) | mir-181 | 1.20–2.20 | 1.70 |
| miR-1259 | 2 | 18 (9/9) | – | 3.00–19.89 | 11.44 |
| miR-335 | 2 | 24 (12/12) | mir-335 | 2.01–5.81 | 3.91 |
| miR-424 | 2 | 136 (96/40) | mir-322 | 1.52–3.37 | 2.44 |
| miR-542-3p | 2 | 18 (9/9) | mir-542 | 2.65–3.03 | 2.84 |
Consistently reported downregulated miRNAs in profiling studies (gastric cancer tissue vs. normal).
| miRNA | Reference | No. of tissue sample (cancer/normal) | miRNA family | Fold change | Median fold change |
|---|---|---|---|---|---|
| miR-375 | 6 | 608 (348/260) | mir-375 | 0.15–0.37 | 0.27 |
| miR-148a | 5 | 596 (342/254) | mir-148 | 0.19–0.47 | 0.23 |
| miR-30d | 5 | 581 (326/255) | mir-30 | 0.50–0.78 | 0.69 |
| miR-638 | 4 | 125 (71/54) | mir-638 | 0.32–0.57 | 0.46 |
| miR-29c | 4 | 516 (302/214) | mir-29 | 0.16–0.70 | 0.40 |
| miR-155 | 4 | 169 (123/46) | mir-155 | 0.36–0.66 | 0.42 |
| miR-378 | 3 | 98 (49/49) | mir-378 | 0.25–0.29 | 0.27 |
| miR-152 | 3 | 489 (280/209) | mir-148 | 0.44–0.78 | 0.70 |
| miR-30c | 3 | 489 (280/209) | mir-30 | 0.67–0.75 | 0.70 |
| miR-218 | 3 | 434 (224/210) | mir-218 | – | 0.60 |
| miR-133b | 2 | 130 (93/37) | mir-133 | 0.07–0.32 | 0.19 |
| miR-150 | 2 | 130 (93/37) | mir-150 | 0.46–0.49 | 0.47 |
| miR-564 | 2 | 204 (130/74) | mir-564 | – | 0.72 |
| miR-489 | 2 | 130 (93/37) | mir-489 | 0.41–0.71 | 0.56 |
| miR-136 | 2 | 81 (40/41) | mir-136 | – | 0.60 |
| miR-197 | 2 | 47 (34/13) | mir-197 | – | – |
| miR-923 | 2 | 92 (46/46) | – | – | 0.46 |
| miR-490 | 2 | 33 (27/6) | mir-490 | – | 0.35 |
| miR-146a | 2 | 136 (96/40) | mir-146 | 0.24–0.39 | 0.31 |
| miR-188 | 2 | 107 (64/43) | mir-188 | – | – |
| miR-34b | 2 | 130 (93/37) | mir-34 | 0.43–0.64 | 0.53 |
| miR-370 | 2 | 107 (64/43) | mir-370 | – | – |
| miR-139 | 2 | 92 (46/46) | mir-139 | – | 0.28 |
| miR-513a-5p | 2 | 92 (46/46) | mir-506 | – | 0.30 |
| miR-494 | 2 | 92 (46/46) | mir-154 | – | 0.37 |
| miR-320c | 2 | 18 (9/9) | mir-320 | 0.42–0.47 | 0.44 |
| miR-433 | 2 | 39 (30/9) | mir-433 | – | 0.48 |
| miR-101 | 2 | 59 (43/16) | mir-101 | 0.22–0.49 | 0.35 |
Figure 2MAPK signaling pathway showing the target genes of microRNAs.