Literature DB >> 24900609

Validation of Reactivity Descriptors to Assess the Aromatic Stacking within the Tyrosine Gate of FimH.

Goedele Roos1, Adinda Wellens2, Mohamed Touaibia3, Nao Yamakawa4, Paul Geerlings2, René Roy5, Lode Wyns2, Julie Bouckaert6.   

Abstract

Antagonists of the FimH adhesin, a protein almost universally present at the extremity of type-1 fimbriae expressed by Escherichia coli, have been abundantly in the spotlight as alternative treatments of urinary tract infections. The antagonists function as bacterial antiadhesives through highly specific α-d-mannose binding in a charged and polar pocket at the tip of the FimH lectin domain and by the stacking of alkyl or aromatic moieties substituted on the mannose with two tyrosine residues (Tyr48 and Tyr137) at the entrance of the mannose-binding pocket. Using high-resolution crystal data, interaction energies are calculated for the different observed aromatic stacking modes between the tyrosines and the antagonist. The dispersion component of the interaction energy correlates with the observed electron density. The quantum chemical reactivity descriptors local hardness and polarizability were successfully validated as prediction tools for ligand affinity in the tyrosine gate of FimH and therefore have potential for rapid drug screening.

Entities:  

Keywords:  FimH; dispersion energy; electron distribution; local hardness; polarizability; stacking

Year:  2013        PMID: 24900609      PMCID: PMC4027451          DOI: 10.1021/ml400269v

Source DB:  PubMed          Journal:  ACS Med Chem Lett        ISSN: 1948-5875            Impact factor:   4.345


  7 in total

1.  Structure-based drug design and optimization of mannoside bacterial FimH antagonists.

Authors:  Zhenfu Han; Jerome S Pinkner; Bradley Ford; Robert Obermann; William Nolan; Scott A Wildman; Doug Hobbs; Tom Ellenberger; Corinne K Cusumano; Scott J Hultgren; James W Janetka
Journal:  J Med Chem       Date:  2010-06-24       Impact factor: 7.446

2.  Receptor binding studies disclose a novel class of high-affinity inhibitors of the Escherichia coli FimH adhesin.

Authors:  Julie Bouckaert; Jenny Berglund; Mark Schembri; Erwin De Genst; Lieve Cools; Manfred Wuhrer; Chia-Suei Hung; Jerome Pinkner; Rikard Slättegård; Anton Zavialov; Devapriya Choudhury; Solomon Langermann; Scott J Hultgren; Lode Wyns; Per Klemm; Stefan Oscarson; Stefan D Knight; Henri De Greve
Journal:  Mol Microbiol       Date:  2005-01       Impact factor: 3.501

3.  Carbohydrate-aromatic interactions.

Authors:  Juan Luis Asensio; Ana Ardá; Francisco Javier Cañada; Jesús Jiménez-Barbero
Journal:  Acc Chem Res       Date:  2012-06-15       Impact factor: 22.384

4.  The tyrosine gate as a potential entropic lever in the receptor-binding site of the bacterial adhesin FimH.

Authors:  Adinda Wellens; Martina Lahmann; Mohamed Touaibia; Jonathan Vaucher; Stefan Oscarson; René Roy; Han Remaut; Julie Bouckaert
Journal:  Biochemistry       Date:  2012-06-07       Impact factor: 3.162

5.  Mannosylated G(0) dendrimers with nanomolar affinities to Escherichia coli FimH.

Authors:  Mohamed Touaibia; Adinda Wellens; Tze Chieh Shiao; Qingan Wang; Suzanne Sirois; Julie Bouckaert; René Roy
Journal:  ChemMedChem       Date:  2007-08       Impact factor: 3.466

6.  Influence of the pi-pi interaction on the hydrogen bonding capacity of stacked DNA/RNA bases.

Authors:  Pierre Mignon; Stefan Loverix; Jan Steyaert; Paul Geerlings
Journal:  Nucleic Acids Res       Date:  2005-03-23       Impact factor: 16.971

7.  Intervening with urinary tract infections using anti-adhesives based on the crystal structure of the FimH-oligomannose-3 complex.

Authors:  Adinda Wellens; Corinne Garofalo; Hien Nguyen; Nani Van Gerven; Rikard Slättegård; Jean-Pierre Hernalsteens; Lode Wyns; Stefan Oscarson; Henri De Greve; Scott Hultgren; Julie Bouckaert
Journal:  PLoS One       Date:  2008-04-30       Impact factor: 3.240

  7 in total
  13 in total

Review 1.  Rational design strategies for FimH antagonists: new drugs on the horizon for urinary tract infection and Crohn's disease.

Authors:  Laurel K Mydock-McGrane; Thomas J Hannan; James W Janetka
Journal:  Expert Opin Drug Discov       Date:  2017-06-02       Impact factor: 6.098

2.  Conformational switch of the bacterial adhesin FimH in the absence of the regulatory domain: Engineering a minimalistic allosteric system.

Authors:  Said Rabbani; Brigitte Fiege; Deniz Eris; Marleen Silbermann; Roman Peter Jakob; Giulio Navarra; Timm Maier; Beat Ernst
Journal:  J Biol Chem       Date:  2017-11-27       Impact factor: 5.157

Review 3.  Neutralizing Antibodies Against Allosteric Proteins: Insights From a Bacterial Adhesin.

Authors:  Evgeni V Sokurenko; Veronika Tchesnokova; Gianluca Interlandi; Rachel Klevit; Wendy E Thomas
Journal:  J Mol Biol       Date:  2022-07-04       Impact factor: 6.151

4.  RMSD analysis of structures of the bacterial protein FimH identifies five conformations of its lectin domain.

Authors:  Pearl Magala; Rachel E Klevit; Wendy E Thomas; Evgeni V Sokurenko; Ronald E Stenkamp
Journal:  Proteins       Date:  2019-11-05

5.  Structures of C-mannosylated anti-adhesives bound to the type 1 fimbrial FimH adhesin.

Authors:  Jerome de Ruyck; Marc F Lensink; Julie Bouckaert
Journal:  IUCrJ       Date:  2016-02-26       Impact factor: 4.769

6.  Mutation of Tyr137 of the universal Escherichia coli fimbrial adhesin FimH relaxes the tyrosine gate prior to mannose binding.

Authors:  Said Rabbani; Eva-Maria Krammer; Goedele Roos; Adam Zalewski; Roland Preston; Sameh Eid; Pascal Zihlmann; Martine Prévost; Marc F Lensink; Andrew Thompson; Beat Ernst; Julie Bouckaert
Journal:  IUCrJ       Date:  2017-01-01       Impact factor: 4.769

7.  The price of flexibility - a case study on septanoses as pyranose mimetics.

Authors:  Christoph P Sager; Brigitte Fiege; Pascal Zihlmann; Raghu Vannam; Said Rabbani; Roman P Jakob; Roland C Preston; Adam Zalewski; Timm Maier; Mark W Peczuh; Beat Ernst
Journal:  Chem Sci       Date:  2017-11-08       Impact factor: 9.825

8.  MonteCarbo: A software to generate and dock multifunctionalized ring molecules.

Authors:  Santiago Alonso-Gil
Journal:  J Comput Chem       Date:  2021-05-13       Impact factor: 3.376

9.  A Novel Integrated Way for Deciphering the Glycan Code for the FimH Lectin.

Authors:  Tetiana Dumych; Clarisse Bridot; Sébastien G Gouin; Marc F Lensink; Solomiya Paryzhak; Sabine Szunerits; Ralf Blossey; Rostyslav Bilyy; Julie Bouckaert; Eva-Maria Krammer
Journal:  Molecules       Date:  2018-10-28       Impact factor: 4.411

10.  Sites for Dynamic Protein-Carbohydrate Interactions of O- and C-Linked Mannosides on the E. coli FimH Adhesin.

Authors:  Mohamed Touaibia; Eva-Maria Krammer; Tze C Shiao; Nao Yamakawa; Qingan Wang; Anja Glinschert; Alex Papadopoulos; Leila Mousavifar; Emmanuel Maes; Stefan Oscarson; Gerard Vergoten; Marc F Lensink; René Roy; Julie Bouckaert
Journal:  Molecules       Date:  2017-07-03       Impact factor: 4.411

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