Literature DB >> 24898682

Single-shot three-dimensional structure determination of nanocrystals with femtosecond X-ray free-electron laser pulses.

Rui Xu1, Huaidong Jiang2, Changyong Song3, Jose A Rodriguez4, Zhifeng Huang1, Chien-Chun Chen1, Daewoong Nam5, Jaehyun Park3, Marcus Gallagher-Jones6, Sangsoo Kim3, Sunam Kim3, Akihiro Suzuki7, Yuki Takayama8, Tomotaka Oroguchi8, Yukio Takahashi7, Jiadong Fan2, Yunfei Zou1, Takaki Hatsui3, Yuichi Inubushi3, Takashi Kameshima9, Koji Yonekura3, Kensuke Tono9, Tadashi Togashi9, Takahiro Sato3, Masaki Yamamoto3, Masayoshi Nakasako8, Makina Yabashi3, Tetsuya Ishikawa3, Jianwei Miao1.   

Abstract

Conventional three-dimensional (3D) structure determination methods require either multiple measurements at different sample orientations or a collection of serial sections through a sample. Here we report the experimental demonstration of single-shot 3D structure determination of an object; in this case, individual gold nanocrystals at ~5.5 nm resolution using ~10 fs X-ray free-electron laser pulses. Coherent diffraction patterns are collected from high-index-faceted nanocrystals, each struck by an X-ray free-electron laser pulse. Taking advantage of the symmetry of the nanocrystal and the curvature of the Ewald sphere, we reconstruct the 3D structure of each nanocrystal from a single-shot diffraction pattern. By averaging a sufficient number of identical nanocrystals, this method may be used to determine the 3D structure of nanocrystals at atomic resolution. As symmetry exists in many virus particles, this method may also be applied to 3D structure studies of such particles at nanometer resolution on femtosecond time scales.

Year:  2014        PMID: 24898682     DOI: 10.1038/ncomms5061

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  23 in total

1.  Conformational landscape of a virus by single-particle X-ray scattering.

Authors:  Ahmad Hosseinizadeh; Ghoncheh Mashayekhi; Jeremy Copperman; Peter Schwander; Ali Dashti; Reyhaneh Sepehr; Russell Fung; Marius Schmidt; Chun Hong Yoon; Brenda G Hogue; Garth J Williams; Andrew Aquila; Abbas Ourmazd
Journal:  Nat Methods       Date:  2017-08-14       Impact factor: 28.547

2.  Imaging electron-density fluctuations by multidimensional X-ray photon-coincidence diffraction.

Authors:  Lyuzhou Ye; Jérémy R Rouxel; Daeheum Cho; Shaul Mukamel
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-24       Impact factor: 11.205

Review 3.  Methods and application of coherent X-ray diffraction imaging of noncrystalline particles.

Authors:  Masayoshi Nakasako; Amane Kobayashi; Yuki Takayama; Kenta Asakura; Mao Oide; Koji Okajima; Tomotaka Oroguchi; Masaki Yamamoto
Journal:  Biophys Rev       Date:  2020-03-16

Review 4.  Structural Analysis of Molecular Materials Using the Pair Distribution Function.

Authors:  Maxwell W Terban; Simon J L Billinge
Journal:  Chem Rev       Date:  2021-11-17       Impact factor: 60.622

5.  Overview of the SACLA facility.

Authors:  Makina Yabashi; Hitoshi Tanaka; Tetsuya Ishikawa
Journal:  J Synchrotron Radiat       Date:  2015-04-16       Impact factor: 2.616

6.  The 3D-architecture of individual free silver nanoparticles captured by X-ray scattering.

Authors:  Ingo Barke; Hannes Hartmann; Daniela Rupp; Leonie Flückiger; Mario Sauppe; Marcus Adolph; Sebastian Schorb; Christoph Bostedt; Rolf Treusch; Christian Peltz; Stephan Bartling; Thomas Fennel; Karl-Heinz Meiwes-Broer; Thomas Möller
Journal:  Nat Commun       Date:  2015-02-04       Impact factor: 14.919

7.  Determination of crystallographic intensities from sparse data.

Authors:  Kartik Ayyer; Hugh T Philipp; Mark W Tate; Jennifer L Wierman; Veit Elser; Sol M Gruner
Journal:  IUCrJ       Date:  2015-01-01       Impact factor: 4.769

8.  Direct single-shot phase retrieval from the diffraction pattern of separated objects.

Authors:  Ben Leshem; Rui Xu; Yehonatan Dallal; Jianwei Miao; Boaz Nadler; Dan Oron; Nirit Dudovich; Oren Raz
Journal:  Nat Commun       Date:  2016-02-22       Impact factor: 14.919

9.  Single-particle structure determination by X-ray free-electron lasers: Possibilities and challenges.

Authors:  A Hosseinizadeh; A Dashti; P Schwander; R Fung; A Ourmazd
Journal:  Struct Dyn       Date:  2015-04-30       Impact factor: 2.920

10.  Sparsity-based Ankylography for Recovering 3D molecular structures from single-shot 2D scattered light intensity.

Authors:  Maor Mutzafi; Yoav Shechtman; Yonina C Eldar; Oren Cohen; Mordechai Segev
Journal:  Nat Commun       Date:  2015-08-20       Impact factor: 14.919

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