Literature DB >> 24895856

Fidelity of cotranslational protein targeting by the signal recognition particle.

Xin Zhang1, Shu-ou Shan.   

Abstract

Accurate folding, assembly, localization, and maturation of newly synthesized proteins are essential to all cells and require high fidelity in the protein biogenesis machineries that mediate these processes. Here, we review our current understanding of how high fidelity is achieved in one of these processes, the cotranslational targeting of nascent membrane and secretory proteins by the signal recognition particle (SRP). Recent biochemical, biophysical, and structural studies have elucidated how the correct substrates drive a series of elaborate conformational rearrangements in the SRP and SRP receptor GTPases; these rearrangements provide effective fidelity checkpoints to reject incorrect substrates and enhance the fidelity of this essential cellular pathway. The mechanisms used by SRP to ensure fidelity share important conceptual analogies with those used by cellular machineries involved in DNA replication, transcription, and translation, and these mechanisms likely represent general principles for other complex cellular pathways.

Entities:  

Keywords:  GTPases; RNA; protein biogenesis; protein translocation; ribosome; signal sequence

Mesh:

Substances:

Year:  2014        PMID: 24895856      PMCID: PMC4444370          DOI: 10.1146/annurev-biophys-051013-022653

Source DB:  PubMed          Journal:  Annu Rev Biophys        ISSN: 1936-122X            Impact factor:   12.981


  158 in total

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Authors:  D M Freymann; R J Keenan; R M Stroud; P Walter
Journal:  Nat Struct Biol       Date:  1999-08

2.  ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites.

Authors:  O Emanuelsson; H Nielsen; G von Heijne
Journal:  Protein Sci       Date:  1999-05       Impact factor: 6.725

3.  Signal recognition particle binds to ribosome-bound signal sequences with fluorescence-detected subnanomolar affinity that does not diminish as the nascent chain lengthens.

Authors:  John J Flanagan; Jui-Chang Chen; Yiwei Miao; Yuanlong Shao; Jialing Lin; Paul E Bock; Arthur E Johnson
Journal:  J Biol Chem       Date:  2003-03-05       Impact factor: 5.157

4.  Crystal structure of the complete core of archaeal signal recognition particle and implications for interdomain communication.

Authors:  Ken R Rosendal; Klemens Wild; Guillermo Montoya; Irmgard Sinning
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-01       Impact factor: 11.205

5.  Substrate twinning activates the signal recognition particle and its receptor.

Authors:  Pascal F Egea; Shu-Ou Shan; Johanna Napetschnig; David F Savage; Peter Walter; Robert M Stroud
Journal:  Nature       Date:  2004-01-15       Impact factor: 49.962

6.  Heterodimeric GTPase core of the SRP targeting complex.

Authors:  Pamela J Focia; Irina V Shepotinovskaya; James A Seidler; Douglas M Freymann
Journal:  Science       Date:  2004-01-16       Impact factor: 47.728

7.  Trigger factor and DnaK cooperate in folding of newly synthesized proteins.

Authors:  E Deuerling; A Schulze-Specking; T Tomoyasu; A Mogk; B Bukau
Journal:  Nature       Date:  1999-08-12       Impact factor: 49.962

8.  Crystal structure of the signal sequence binding subunit of the signal recognition particle.

Authors:  R J Keenan; D M Freymann; P Walter; R M Stroud
Journal:  Cell       Date:  1998-07-24       Impact factor: 41.582

Review 9.  Protein folding in the cytosol: chaperonin-dependent and -independent mechanisms.

Authors:  W J Netzer; F U Hartl
Journal:  Trends Biochem Sci       Date:  1998-02       Impact factor: 13.807

10.  Interplay of signal recognition particle and trigger factor at L23 near the nascent chain exit site on the Escherichia coli ribosome.

Authors:  Ronald S Ullers; Edith N G Houben; Amanda Raine; Corinne M ten Hagen-Jongman; Måns Ehrenberg; Joseph Brunner; Bauke Oudega; Nellie Harms; Joen Luirink
Journal:  J Cell Biol       Date:  2003-05-19       Impact factor: 10.539

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  37 in total

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2.  Cell biology: Sort of unexpected.

Authors:  Martin R Pool
Journal:  Nature       Date:  2016-11-30       Impact factor: 49.962

3.  Sequential activation of human signal recognition particle by the ribosome and signal sequence drives efficient protein targeting.

Authors:  Jae Ho Lee; Sowmya Chandrasekar; SangYoon Chung; Yu-Hsien Hwang Fu; Demi Liu; Shimon Weiss; Shu-Ou Shan
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-30       Impact factor: 11.205

4.  UBQLN4 recognizes mislocalized transmembrane domain proteins and targets these to proteasomal degradation.

Authors:  Rigel Suzuki; Hiroyuki Kawahara
Journal:  EMBO Rep       Date:  2016-04-22       Impact factor: 8.807

5.  C-terminal tail length guides insertion and assembly of membrane proteins.

Authors:  Sha Sun; Malaiyalam Mariappan
Journal:  J Biol Chem       Date:  2020-09-02       Impact factor: 5.157

Review 6.  The Sec System: Protein Export in Escherichia coli.

Authors:  Jennine M Crane; Linda L Randall
Journal:  EcoSal Plus       Date:  2017-11

7.  Membrane proteomic analysis reveals overlapping and independent functions of Streptococcus mutans Ffh, YidC1, and YidC2.

Authors:  Surabhi Mishra; Paula J Crowley; Katherine R Wright; Sara R Palmer; Alejandro R Walker; Susmita Datta; L Jeannine Brady
Journal:  Mol Oral Microbiol       Date:  2019-06-07       Impact factor: 3.563

Review 8.  Regulation of Clathrin-Mediated Endocytosis.

Authors:  Marcel Mettlen; Ping-Hung Chen; Saipraveen Srinivasan; Gaudenz Danuser; Sandra L Schmid
Journal:  Annu Rev Biochem       Date:  2018-04-16       Impact factor: 23.643

9.  Noncoding Y RNAs regulate the levels, subcellular distribution and protein interactions of their Ro60 autoantigen partner.

Authors:  Yuanyuan Leng; Soyeong Sim; Valentin Magidson; Sandra L Wolin
Journal:  Nucleic Acids Res       Date:  2020-07-09       Impact factor: 16.971

Review 10.  ATPase and GTPase Tangos Drive Intracellular Protein Transport.

Authors:  Shu-Ou Shan
Journal:  Trends Biochem Sci       Date:  2016-09-19       Impact factor: 13.807

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