Literature DB >> 24895851

Mechanisms of cellular proteostasis: insights from single-molecule approaches.

Carlos J Bustamante1, Christian M Kaiser, Rodrigo A Maillard, Daniel H Goldman, Christian A M Wilson.   

Abstract

Cells employ a variety of strategies to maintain proteome homeostasis. Beginning during protein biogenesis, the translation machinery and a number of molecular chaperones promote correct de novo folding of nascent proteins even before synthesis is complete. Another set of molecular chaperones helps to maintain proteins in their functional, native state. Polypeptides that are no longer needed or pose a threat to the cell, such as misfolded proteins and aggregates, are removed in an efficient and timely fashion by ATP-dependent proteases. In this review, we describe how applications of single-molecule manipulation methods, in particular optical tweezers, are shedding new light on the molecular mechanisms of quality control during the life cycles of proteins.

Entities:  

Keywords:  chaperones; force spectroscopy; proteases; protein folding; ribosome; worm-like chain

Mesh:

Substances:

Year:  2014        PMID: 24895851      PMCID: PMC4620553          DOI: 10.1146/annurev-biophys-051013-022811

Source DB:  PubMed          Journal:  Annu Rev Biophys        ISSN: 1936-122X            Impact factor:   12.981


  96 in total

1.  Video imaging of walking myosin V by high-speed atomic force microscopy.

Authors:  Noriyuki Kodera; Daisuke Yamamoto; Ryoki Ishikawa; Toshio Ando
Journal:  Nature       Date:  2010-10-10       Impact factor: 49.962

2.  Mechanism of force generation of a viral DNA packaging motor.

Authors:  Yann R Chemla; K Aathavan; Jens Michaelis; Shelley Grimes; Paul J Jardine; Dwight L Anderson; Carlos Bustamante
Journal:  Cell       Date:  2005-09-09       Impact factor: 41.582

3.  Theory, analysis, and interpretation of single-molecule force spectroscopy experiments.

Authors:  Olga K Dudko; Gerhard Hummer; Attila Szabo
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-13       Impact factor: 11.205

4.  Electrostatic effects on funneled landscapes and structural diversity in denatured protein ensembles.

Authors:  Patrick Weinkam; Ekaterina V Pletneva; Harry B Gray; Jay R Winkler; Peter G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-30       Impact factor: 11.205

5.  Linkage between ATP consumption and mechanical unfolding during the protein processing reactions of an AAA+ degradation machine.

Authors:  Jon A Kenniston; Tania A Baker; Julio M Fernandez; Robert T Sauer
Journal:  Cell       Date:  2003-08-22       Impact factor: 41.582

6.  Reshaping of the conformational search of a protein by the chaperone trigger factor.

Authors:  Alireza Mashaghi; Günter Kramer; Philipp Bechtluft; Beate Zachmann-Brand; Arnold J M Driessen; Bernd Bukau; Sander J Tans
Journal:  Nature       Date:  2013-07-07       Impact factor: 49.962

7.  Slippery substrates impair function of a bacterial protease ATPase by unbalancing translocation versus exit.

Authors:  Priscilla Hiu-Mei Too; Jenny Erales; Joana Danica Simen; Antonija Marjanovic; Philip Coffino
Journal:  J Biol Chem       Date:  2013-03-25       Impact factor: 5.157

8.  Direct observation of chaperone-induced changes in a protein folding pathway.

Authors:  Philipp Bechtluft; Ruud G H van Leeuwen; Matthew Tyreman; Danuta Tomkiewicz; Nico Nouwen; Harald L Tepper; Arnold J M Driessen; Sander J Tans
Journal:  Science       Date:  2007-11-30       Impact factor: 47.728

Review 9.  Single-molecule analysis of translational dynamics.

Authors:  Alexey Petrov; Jin Chen; Seán O'Leary; Albert Tsai; Joseph D Puglisi
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-09-01       Impact factor: 10.005

Review 10.  Design principles of protein biosynthesis-coupled quality control.

Authors:  Monica C Rodrigo-Brenni; Ramanujan S Hegde
Journal:  Dev Cell       Date:  2012-11-13       Impact factor: 12.270

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  13 in total

Review 1.  Proteotoxicity and cardiac dysfunction.

Authors:  Patrick M McLendon; Jeffrey Robbins
Journal:  Circ Res       Date:  2015-05-22       Impact factor: 17.367

2.  Repurposing a Benchtop Centrifuge for High-Throughput Single-Molecule Force Spectroscopy.

Authors:  Darren Yang; Wesley P Wong
Journal:  Methods Mol Biol       Date:  2018

Review 3.  Beyond the Triplet Code: Context Cues Transform Translation.

Authors:  Gloria A Brar
Journal:  Cell       Date:  2016-12-15       Impact factor: 41.582

4.  Exploring the Denatured State Ensemble by Single-Molecule Chemo-Mechanical Unfolding: The Effect of Force, Temperature, and Urea.

Authors:  Emily J Guinn; Susan Marqusee
Journal:  J Mol Biol       Date:  2017-08-04       Impact factor: 5.469

5.  Asymmetric cell division requires specific mechanisms for adjusting global transcription.

Authors:  Adriana Mena; Daniel A Medina; José García-Martínez; Victoria Begley; Abhyudai Singh; Sebastián Chávez; Mari C Muñoz-Centeno; José E Pérez-Ortín
Journal:  Nucleic Acids Res       Date:  2017-12-01       Impact factor: 16.971

6.  Mechanical properties of BiP protein determined by nano-rheology.

Authors:  Nathalie Casanova-Morales; Diego Quiroga-Roger; Hilda M Alfaro-Valdés; Zahra Alavi; Miguel I A Lagos-Espinoza; Giovanni Zocchi; Christian A M Wilson
Journal:  Protein Sci       Date:  2018-08       Impact factor: 6.725

Review 7.  Heat shock proteins and their expression in primary murine cardiac cell populations during ischemia and reperfusion.

Authors:  Sreejit Parameswaran Nair; Rajendra K Sharma
Journal:  Mol Cell Biochem       Date:  2019-11-01       Impact factor: 3.396

8.  Multiplexed single-molecule force spectroscopy using a centrifuge.

Authors:  Darren Yang; Andrew Ward; Ken Halvorsen; Wesley P Wong
Journal:  Nat Commun       Date:  2016-03-17       Impact factor: 14.919

Review 9.  Mining the Biomarker Potential of the Urine Peptidome: From Amino Acids Properties to Proteases.

Authors:  Fábio Trindade; António S Barros; Jéssica Silva; Antonia Vlahou; Inês Falcão-Pires; Sofia Guedes; Carla Vitorino; Rita Ferreira; Adelino Leite-Moreira; Francisco Amado; Rui Vitorino
Journal:  Int J Mol Sci       Date:  2021-05-31       Impact factor: 5.923

10.  Role of mRNA structure in the control of protein folding.

Authors:  Guilhem Faure; Aleksey Y Ogurtsov; Svetlana A Shabalina; Eugene V Koonin
Journal:  Nucleic Acids Res       Date:  2016-07-27       Impact factor: 16.971

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