Literature DB >> 24893940

Exome sequencing: new insights into lipoprotein disorders.

Sali M K Farhan1, Robert A Hegele.   

Abstract

Several next generation sequencing platforms allow for a DNA-to-diagnosis protocol to identify the molecular basis of monogenic dyslipidemias. However, recent reports of the application of whole genome or whole exome sequencing in families with severe dyslipidemias have largely identified genetic variants in known lipid genes. To date, high-throughput DNA sequencing in families with previously uncharacterized monogenic dyslipidemias, have failed to reveal new genes for regulation of plasma lipids. This suggests that rather than sequencing whole genomes or exomes, most patients with monogenic dyslipidemias could be diagnosed using a more dedicated approach that focuses primarily on genes already known to act within lipoprotein metabolic pathways.

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Year:  2014        PMID: 24893940     DOI: 10.1007/s11886-014-0507-2

Source DB:  PubMed          Journal:  Curr Cardiol Rep        ISSN: 1523-3782            Impact factor:   2.931


  44 in total

1.  Accumulation of dietary cholesterol in sitosterolemia caused by mutations in adjacent ABC transporters.

Authors:  K E Berge; H Tian; G A Graf; L Yu; N V Grishin; J Schultz; P Kwiterovich; B Shan; R Barnes; H H Hobbs
Journal:  Science       Date:  2000-12-01       Impact factor: 47.728

2.  A novel APOB mutation identified by exome sequencing cosegregates with steatosis, liver cancer, and hypocholesterolemia.

Authors:  Angelo B Cefalù; James P Pirruccello; Davide Noto; Stacey Gabriel; Vincenza Valenti; Namrata Gupta; Rossella Spina; Patrizia Tarugi; Sekar Kathiresan; Maurizio R Averna
Journal:  Arterioscler Thromb Vasc Biol       Date:  2013-05-30       Impact factor: 8.311

3.  First FDA authorization for next-generation sequencer.

Authors:  Francis S Collins; Margaret A Hamburg
Journal:  N Engl J Med       Date:  2013-11-19       Impact factor: 91.245

Review 4.  What can exome sequencing do for you?

Authors:  Jacek Majewski; Jeremy Schwartzentruber; Emilie Lalonde; Alexandre Montpetit; Nada Jabado
Journal:  J Med Genet       Date:  2011-07-05       Impact factor: 6.318

5.  Targeted next generation sequencing as a diagnostic tool in epileptic disorders.

Authors:  Johannes R Lemke; Erik Riesch; Tim Scheurenbrand; Max Schubach; Christian Wilhelm; Isabelle Steiner; Jörg Hansen; Carolina Courage; Sabina Gallati; Sarah Bürki; Susi Strozzi; Barbara Goeggel Simonetti; Sebastian Grunt; Maja Steinlin; Michael Alber; Markus Wolff; Thomas Klopstock; Eva C Prott; Rüdiger Lorenz; Christiane Spaich; Sabine Rona; Maya Lakshminarasimhan; Judith Kröll; Thomas Dorn; Günter Krämer; Matthis Synofzik; Felicitas Becker; Yvonne G Weber; Holger Lerche; Detlef Böhm; Saskia Biskup
Journal:  Epilepsia       Date:  2012-05-21       Impact factor: 5.864

6.  Next generation sequencing-based molecular diagnosis of retinitis pigmentosa: identification of a novel genotype-phenotype correlation and clinical refinements.

Authors:  Feng Wang; Hui Wang; Han-Fang Tuan; Duy H Nguyen; Vincent Sun; Vafa Keser; Sara J Bowne; Lori S Sullivan; Hongrong Luo; Ling Zhao; Xia Wang; Jacques E Zaneveld; Jason S Salvo; Sorath Siddiqui; Louise Mao; Dianna K Wheaton; David G Birch; Kari E Branham; John R Heckenlively; Cindy Wen; Ken Flagg; Henry Ferreyra; Jacqueline Pei; Ayesha Khan; Huanan Ren; Keqing Wang; Irma Lopez; Raheel Qamar; Juan C Zenteno; Raul Ayala-Ramirez; Beatriz Buentello-Volante; Qing Fu; David A Simpson; Yumei Li; Ruifang Sui; Giuliana Silvestri; Stephen P Daiger; Robert K Koenekoop; Kang Zhang; Rui Chen
Journal:  Hum Genet       Date:  2013-10-24       Impact factor: 4.132

7.  Apolipoprotein E gene mutations in subjects with mixed hyperlipidemia and a clinical diagnosis of familial combined hyperlipidemia.

Authors:  María Solanas-Barca; Isabel de Castro-Orós; Rocío Mateo-Gallego; Montserrat Cofán; Nuria Plana; José Puzo; Elena Burillo; Paula Martín-Fuentes; Emilio Ros; Luis Masana; Miguel Pocoví; Fernando Civeira; Ana Cenarro
Journal:  Atherosclerosis       Date:  2012-03-16       Impact factor: 5.162

Review 8.  Next-generation sequencing: a powerful tool for the discovery of molecular markers in breast ductal carcinoma in situ.

Authors:  Hitchintan Kaur; Shihong Mao; Seema Shah; David H Gorski; Stephen A Krawetz; Bonnie F Sloane; Raymond R Mattingly
Journal:  Expert Rev Mol Diagn       Date:  2013-03       Impact factor: 5.225

9.  LipidSeq: a next-generation clinical resequencing panel for monogenic dyslipidemias.

Authors:  Christopher T Johansen; Joseph B Dubé; Melissa N Loyzer; Austin MacDonald; David E Carter; Adam D McIntyre; Henian Cao; Jian Wang; John F Robinson; Robert A Hegele
Journal:  J Lipid Res       Date:  2014-02-06       Impact factor: 5.922

10.  Evaluation of next generation sequencing platforms for population targeted sequencing studies.

Authors:  Olivier Harismendy; Pauline C Ng; Robert L Strausberg; Xiaoyun Wang; Timothy B Stockwell; Karen Y Beeson; Nicholas J Schork; Sarah S Murray; Eric J Topol; Samuel Levy; Kelly A Frazer
Journal:  Genome Biol       Date:  2009-03-27       Impact factor: 13.583

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  8 in total

Review 1.  Emerging risk biomarkers in cardiovascular diseases and disorders.

Authors:  Ravi Kant Upadhyay
Journal:  J Lipids       Date:  2015-04-08

Review 2.  Genetics of Lipid and Lipoprotein Disorders and Traits.

Authors:  Jacqueline S Dron; Robert A Hegele
Journal:  Curr Genet Med Rep       Date:  2016-06-07

3.  Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease.

Authors:  Allison A Dilliott; Sali M K Farhan; Mahdi Ghani; Christine Sato; Eric Liang; Ming Zhang; Adam D McIntyre; Henian Cao; Lemuel Racacho; John F Robinson; Michael J Strong; Mario Masellis; Dennis E Bulman; Ekaterina Rogaeva; Anthony Lang; Carmela Tartaglia; Elizabeth Finger; Lorne Zinman; John Turnbull; Morris Freedman; Rick Swartz; Sandra E Black; Robert A Hegele
Journal:  J Vis Exp       Date:  2018-04-04       Impact factor: 1.355

4.  A Customized Next-Generation Sequencing-Based Panel to Identify Novel Genetic Variants in Dementing Disorders: A Pilot Study.

Authors:  Giuseppe Lanza; Francesco Calì; Mirella Vinci; Filomena Irene Ilaria Cosentino; Mariangela Tripodi; Rosario Sebastiano Spada; Mariagiovanna Cantone; Rita Bella; Teresa Mattina; Raffaele Ferri
Journal:  Neural Plast       Date:  2020-08-18       Impact factor: 3.599

5.  Confirming Genetic Abnormalities of Hypokalemic Periodic Paralysis Using Next-Generation Sequencing: A Case Report and Literature Review.

Authors:  Hae Ri Kim; Jae Wan Jeon; Eu Jin Lee; Young Rok Ham; Ki Ryang Na; Kang Wook Lee; Kee Hong Park; Seon Young Kim; Dae Eun Choi
Journal:  Electrolyte Blood Press       Date:  2021-06-30

6.  Identification of a novel synaptic protein, TMTC3, involved in periventricular nodular heterotopia with intellectual disability and epilepsy.

Authors:  Sali M K Farhan; Kevin C J Nixon; Michelle Everest; Tara N Edwards; Shirley Long; Dmitri Segal; Maria J Knip; Heleen H Arts; Rana Chakrabarti; Jian Wang; John F Robinson; Donald Lee; Seyed M Mirsattari; C Anthony Rupar; Victoria M Siu; Michael O Poulter; Robert A Hegele; Jamie M Kramer
Journal:  Hum Mol Genet       Date:  2017-11-01       Impact factor: 6.150

7.  The ONDRISeq panel: custom-designed next-generation sequencing of genes related to neurodegeneration.

Authors:  Sali M K Farhan; Allison A Dilliott; Mahdi Ghani; Christine Sato; Eric Liang; Ming Zhang; Adam D McIntyre; Henian Cao; Lemuel Racacho; John F Robinson; Michael J Strong; Mario Masellis; Peter St George-Hyslop; Dennis E Bulman; Ekaterina Rogaeva; Robert A Hegele
Journal:  NPJ Genom Med       Date:  2016-09-21       Impact factor: 8.617

8.  Six years' experience with LipidSeq: clinical and research learnings from a hybrid, targeted sequencing panel for dyslipidemias.

Authors:  Jacqueline S Dron; Jian Wang; Adam D McIntyre; Michael A Iacocca; John F Robinson; Matthew R Ban; Henian Cao; Robert A Hegele
Journal:  BMC Med Genomics       Date:  2020-02-10       Impact factor: 3.063

  8 in total

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