| Literature DB >> 24883016 |
Z Mimivati1, K Nurliza1, M Marini2, At Liza-Sharmini3.
Abstract
PURPOSE: To screen for mutations in the coding region of the myocilin (MYOC) gene in a large Malay family with juvenile-onset open angle glaucoma (JOAG).Entities:
Mesh:
Substances:
Year: 2014 PMID: 24883016 PMCID: PMC4037532
Source DB: PubMed Journal: Mol Vis ISSN: 1090-0535 Impact factor: 2.367
Sequence and size of primers.
| Primer | Sequence | Size | T |
|---|---|---|---|
| MYOC E1A | Fwd: 5′ CCCAGTATATATAAACCTCTCTGG 3′ | 423 bp | 55.9 |
| Rev: 5′ AAGGTCAATTGGTGGAGGAG 3′ | |||
| MYOC E1B | Fwd: 5′ CTTACAGAGAGACAGCAGCAC 3′ | 453 bp | 60 |
| Rev: 5′ CCTGTAGCAGGTCACTACGA 3′ | |||
| MYOC E2 | Fwd: 5′ CATCCTCAACATAGTCAATCCT 3′ | 352 bp | 60 |
| Rev: 5′ AGAGTTCTGTTCCTCTTCTCCT 3′ | |||
| MYOC E3A | Fwd: 5′ GATCATTGTCTGTGTTTGGA 3′ | 570 bp | 57.9 |
| Rev: 5′ AGATTCTCTGGGTTCAGTTTG 3′ | |||
| MYOC E3B | Fwd: 5′ ATTGTCCTCTCCAAACTGAAC 3′ | 554 bp | 56.8 |
| Rev: 5′ AACATCCCATAAATGCTGAC 3′ | |||
| MYOC E3C | Fwd: 5′ TGAGGGCGTAGACAATTTCA 3′ | 609 bp | 55.9 |
| Rev: 5′ TGGATGCTGCTATTTGCTTG 3′ |
Ta: Temperature for annealing
Figure 1Schematic diagram of the location of the six pairs of primers for MYOC screening and the pedigree chart of four generations of a Malay family with juvenile-onset open angle glaucoma.
Clinical characteristic of JOAG probands.
| OD | OS | OD | OS | OD | OS | OD | OS | OD | OS | OD | OS | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| II:3 | F | NPL | NPL | 38 | 35 | 10 | Nil | Nil | Nil | Nil | Nil | Nil | Severe | Severe | No |
| II:7 | F | NPL | 6/12 | 25 | Nil | 12 | 0.9 | 0.9 | Nil | 510 | Nil | Borderline | Severe | Severe | Surgical |
| II:11 | F | 6/15 | 6/15 | 40 | 16 | 20 | 0.9 | 0.5 | 551 | 527 | Abnormal | Abnormal | Severe | Severe | Surgical |
| II:14 | M | NPL | 6/7.5 | 40 | 58 | 58 | Nil | 0.7 | 557 | 539 | Nil | Abnormal | Severe | Severe | Surgical |
| III:2 | F | NPL | NPL | 42 | 42 | 42 | Nil | Nil | 539 | 480 | Nil | Nil | Severe | Severe | No |
| III:3 | F | 6/6 | 6/7.5 | 40 | 56 | 56 | 0.9 | 0.9 | 468 | 469 | Borderline | Normal | Severe | Severe | Medical |
| III:5* | M | 6/7.5 | 6/7.5 | 47 | 24 | 16 | 0.8 | 0.2 | 515 | 497 | Borderline | Normal | Severe | Severe | Nil |
| III:6 | F | 6/6 | 6/6 | 40 | 20 | 24 | 0.5 | 0.4 | Nil | Nil | Nil | Nil | Mild | Normal | Medical |
| III:7 | M | NPL | NPL | 36 | 46 | 45 | 1 | 0.9 | Nil | Nil | Abnormal | Abnormal | Severe | Severe | Nil |
| III:8 | F | HM | 6/24 | 31 | 11 | 17 | 0.9 | 0.8 | Nil | Nil | Normal | Normal | Severe | Severe | Medical |
| III:19 | F | NPL | 6/12 | 36 | 60 | 40 | 0.9 | 0.3 | 533 | 502 | Normal | Nil | Severe | Normal | Surgical |
| III:20 | F | 6/6 | NPL | 34 | 16 | 16 | 0.9 | 0.9 | Nil | Nil | Normal | Normal | Severe | Severe | Surgical |
| III:21 | M | 6/7.5 | 6/7.5 | 29 | 32 | 32 | 0.7 | 0.6 | 466 | 439 | Normal | Normal | Severe | Moderate | Both |
| III:23 | M | 6/6 | 6/6 | 32 | 20 | 23 | 0.5 | 0.3 | 510 | 512 | Normal | Normal | Normal | Mild | Surgical |
| III:24* | F | 6/6 | 6/6 | 37 | 49 | 33 | 0.7 | 0.5 | 517 | 509 | Normal | Abnormal | Normal | Normal | Medical |
| III:25* | M | 6/6 | 6/6 | 34 | 49 | 49 | 0.8 | 0.9 | 517 | 506 | Nil | Nil | Normal | Severe | Medical |
| III:27 | F | PL | 6/9 | 17 | 30 | 22 | 0.9 | 0.9 | Nil | Nil | Normal | Normal | Severe | Severe | Surgical |
| III:28* | M | 6/7.5 | 6/6 | 23 | 28 | 35 | 0.4 | 0.5 | 501 | 506 | Abnormal | Abnormal | Normal | Normal | Medical |
| III:36 | M | 6/18 | 6/6 | 32 | 50 | 50 | 0.9 | 0.9 | 504 | 499 | Normal | Abnormal | Severe | Moderate | Both |
| III:39 | F | 6/6 | 6/6 | 24 | 16 | 14 | 0.5 | 0.7 | 510 | 513 | Nil | Nil | Normal | Normal | Medical |
| III:40 | F | 6/9 | 6/6 | 25 | 20 | 19 | 0.5 | 0.3 | 487 | 488 | Normal | Normal | Normal | Normal | Medical |
| III:41* | M | 6/6 | 6/6 | 30 | 50 | 54 | 0.3 | 0.3 | 563 | 560 | Normal | Normal | Normal | Normal | Medical |
| III:42* | M | 6/6 | 6/6 | 25 | 29 | 37 | 0.6 | 0.7 | 557 | 556 | Normal | Normal | Normal | Normal | Medical |
| III:43 | F | 6/5 | 6/5 | 16 | 24 | 22 | 0.3 | 0.3 | 519 | 529 | Nil | Nil | Normal | Normal | Medical |
| III:59* | M | 6/7.5 | 6/7.5 | 22 | 27 | 25 | 0.4 | 0.3 | 557 | 565 | Abnormal | Borderline | Normal | Normal | Medical |
| III:62* | M | 6/6 | 6/6 | 17 | 36 | 36 | 0.8 | 0.7 | 537 | 554 | Abnormal | Abnormal | Severe | Severe | Medical |
| III:63* | M | 6/7.5 | 6/7.5 | 16 | 38 | 40 | 0.6 | 0.9 | 527 | 532 | Abnormal | Abnormal | Moderate | Severe | Medical |
| IV:1 | M | NPL | NPL | 16 | 44 | 5 | 0.9 | 0.9 | 488 | 536 | Abnormal | Abnormal | Severe | Severe | No |
| IV:6 | M | 6/9 | 6/7.5 | 33 | 53 | 54 | 0.9 | 0.9 | 531 | 534 | Normal | Normal | Severe | Severe | Medical |
| IV:11* | F | 6/6 | 6/6 | 31 | 34 | 25 | 0.4 | 0.4 | 454 | 455 | Normal | Normal | Normal | Normal | Medical |
| IV:15* | M | 6/7.5 | 6/7.5 | 18 | 26 | 26 | 0.6 | 0.4 | 465 | 466 | Normal | Normal | Mild | Moderate | Medical |
| IV:48 | F | 6/12 | 6/9 | 13 | 33 | 33 | 0.4 | 0.4 | 565 | 562 | Normal | Normal | Normal | Normal | Both |
*Newly diagnosed juvenile-onset open angle glaucoma (11 cases); AGE*: Age at diagnosis; IOP: Intraocular pressure; VCDR: Vertical cup disc ratio; CCT: Central corneal thickness; HRT: Heidelberg retinal tomography II; RNFL: Retinal nerve fiber layer; Nil: not done or not available; NPL: no perception to light; HM: hand movement.
Figure 2Electropherogram and nucleotide basic local alignment search tool (BLASTn) showing heterozygous Asn480Lys at position 1440th nucleotide in exon 3 (A) and substitution of G to A of IVS2 730 +35 (B).
Genotype and allele frequency for Asn480 Lys and IVS2 730+35G>A (rs2032555) between affected and non-affected probands.
| MYOC variation | |||
|---|---|---|---|
| N (%) | N (%) | | |
| Asn480Asn | 2 (6.3) | 84 (93.3) | |
| Asn480Lys | 25 (78.1) | 6 (6.7) | <0.001 |
| Lys480Lys | 5 (15.6) | 0 (0.0) | |
| C | 0.45 | 0.97 | <0.001 |
| A | 0.55 | 0.03 | |
| N (%) | N (%) | | |
| GG | 5 (15.6) | 4 (4.4) | |
| GA | 22(68.8) | 23 (25.6) | <0.001 |
| AA | 5 (15.6) | 63 (70.0) | |
| G | 0.50 | 0.17 | <0.001 |
| A | 0.50 | 0.83 | |
Association between clinical parameters in JOAG probands and genotype frequency of Asn 480 Lys and IVS 2 730+35G>A (rs2032555).
| CC
n=2 | CA
n=25 | AA
n=5 | CC
n=5 | CA
n=22 | AA
n=5 | |||
| Mean age (SD; year) n=32 | 40.0
(9.9) | 29.5
(9.1) | 24.4
(8.8) | 0.457* | 26.0
(6.9) | 29.5
(9.1) | 28.6 (10.2) | 0.742* |
| | n=2 | n=17 | n=3 | | n=3 | n=17 | n=2 | |
| Mean IOP (SD)
(mmHg) n=22 | 34.5 (16.2) | 40.4 (12.8) | 27.0
(6.6) | 0.284* | 42.0
(16.5) | 36.6 (12.9) | 44.0
(22.6) | 0.681* |
| Mean VCDR | 0.56 (0.25) | 0.70 (0.24) | 0.58 (0.22) | 0.280* | 0.62
(0.27) | 0.69 (0.22) | 0.59 (0.28) | 0.557* |
| Visual field defect | n=2 | n=17 | n=4 | | n=5 | n=17 | n=1 | |
| Mean MD (SD)
n=23 | −23.64 (2.07) | −10.21 (12.11) | −5.28 (6.33) | 0.184* | −9.86 (11.53) | −11.20 (12.03) | −2.27
(-) | 0.763* |
| | n=2 | n=19 | n=4 | | | | | |
| Mean CCT (SD; µm)
n=25 | 523 (11) | 518 (34) | 511 (41) | 0.890* | 510 (16) | 518 (38) | 524 (20) | 0.834* |
| Severity | | | | | | | | |
| Early | 0 | 9 | 3 | 0.738# | 3 | 8 | 1 | 0.839# |
| Mild | 0 | 2 | 0 | | 0 | 2 | 0 | |
| Moderate | 0 | 1 | 0 | | 0 | 1 | 0 | |
| Severe | 2 | 13 | 2 | 2 | 11 | 4 | ||
p<0.05 is considered significant based on One way ANOVA* and Fisher exact test#; IOP: intraocular pressure; VCDR: vertical cup disc ratio; MD: mean deviation of Humphrey field analysis; CCT: central corneal thickness.