Literature DB >> 24880709

Human genome variability, natural selection and infectious diseases.

Matteo Fumagalli1, Manuela Sironi2.   

Abstract

The recent availability of large-scale sequencing DNA data allowed researchers to investigate how genomic variation is distributed among populations. While demographic factors explain genome-wide population genetic diversity levels, scans for signatures of natural selection pinpointed several regions under non-neutral evolution. Recent studies found an enrichment of immune-related genes subjected to natural selection, suggesting that pathogens and infectious diseases have imposed a strong selective pressure throughout human history. Pathogen-mediated selection often targeted regulatory sites of genes belonging to the same biological pathway. Results from these studies have the potential to identify mutations that modulate infection susceptibility by integrating a population genomic approach with molecular immunology data and large-scale functional annotations.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 24880709     DOI: 10.1016/j.coi.2014.05.001

Source DB:  PubMed          Journal:  Curr Opin Immunol        ISSN: 0952-7915            Impact factor:   7.486


  26 in total

1.  Genomic Signatures of Selective Pressures and Introgression from Archaic Hominins at Human Innate Immunity Genes.

Authors:  Matthieu Deschamps; Guillaume Laval; Maud Fagny; Yuval Itan; Laurent Abel; Jean-Laurent Casanova; Etienne Patin; Lluis Quintana-Murci
Journal:  Am J Hum Genet       Date:  2016-01-07       Impact factor: 11.025

Review 2.  Hunter-gatherer genomics: evolutionary insights and ethical considerations.

Authors:  Richard J Bankoff; George H Perry
Journal:  Curr Opin Genet Dev       Date:  2016-07-09       Impact factor: 5.578

3.  Genetic susceptibility to severe childhood asthma and rhinovirus-C maintained by balancing selection in humans for 150 000 years.

Authors:  Mary B O'Neill; Guillaume Laval; João C Teixeira; Ann C Palmenberg; Caitlin S Pepperell
Journal:  Hum Mol Genet       Date:  2020-03-27       Impact factor: 6.150

Review 4.  Selection Balancing at Innate Immune Genes: Adaptive Polymorphism Maintenance in Toll-Like Receptors.

Authors:  Piotr Minias; Michal Vinkler
Journal:  Mol Biol Evol       Date:  2022-05-03       Impact factor: 8.800

Review 5.  Evolutionary and population (epi)genetics of immunity to infection.

Authors:  Luis B Barreiro; Lluis Quintana-Murci
Journal:  Hum Genet       Date:  2020-04-13       Impact factor: 4.132

6.  Variation in CYP2A6 and nicotine metabolism among two American Indian tribal groups differing in smoking patterns and risk for tobacco-related cancer.

Authors:  Julie-Anne Tanner; Jeffrey A Henderson; Dedra Buchwald; Barbara V Howard; Patricia Nez Henderson; Rachel F Tyndale
Journal:  Pharmacogenet Genomics       Date:  2017-05       Impact factor: 2.089

7.  MYD88 and functionally related genes are associated with multiple infections in a model population of Kenyan village dogs.

Authors:  Michaela Necesankova; Leona Vychodilova; Katerina Albrechtova; Lorna J Kennedy; Jan Hlavac; Kamil Sedlak; David Modry; Eva Janova; Mirko Vyskocil; Petr Horin
Journal:  Mol Biol Rep       Date:  2016-09-21       Impact factor: 2.316

8.  Efficient DNA sequence compression with neural networks.

Authors:  Milton Silva; Diogo Pratas; Armando J Pinho
Journal:  Gigascience       Date:  2020-11-11       Impact factor: 6.524

9.  Differential positive selection of malaria resistance genes in three indigenous populations of Peninsular Malaysia.

Authors:  Xuanyao Liu; Yushimah Yunus; Dongsheng Lu; Farhang Aghakhanian; Woei-Yuh Saw; Lian Deng; Mohammad Ali; Xu Wang; Fadzilah Mohd Nor; Fadzilah Ghazali; Thuhairah Abdul Rahman; Shahrul Azlin Shaari; Mohd Zaki Salleh; Maude E Phipps; Rick Twee-Hee Ong; Shuhua Xu; Yik-Ying Teo; Boon-Peng Hoh
Journal:  Hum Genet       Date:  2015-01-30       Impact factor: 5.881

10.  Allelic Spectra of Risk SNPs Are Different for Environment/Lifestyle Dependent versus Independent Diseases.

Authors:  Ivan P Gorlov; Olga Y Gorlova; Christopher I Amos
Journal:  PLoS Genet       Date:  2015-07-22       Impact factor: 5.917

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