Literature DB >> 24871480

Molecular dynamics of thermoenzymes at high temperature and pressure: a review.

Roghayeh Abedi Karjiban1, Wui Zhuan Lim, Mahiran Basri, Mohd Basyaruddin Abdul Rahman.   

Abstract

Lipases are known for their versatility in addition to their ability to digest fat. They can be used for the formulation of detergents, as food ingredients and as biocatalysts in many industrial processes. Because conventional enzymes are frangible at high temperatures, the replacement of conventional chemical routes with biochemical processes that utilize thermostable lipases is vital in the industrial setting. Recent theoretical studies on enzymes have provided numerous fundamental insights into the structures, folding mechanisms and stabilities of these proteins. The studies corroborate the experimental results and provide additional information regarding the structures that were determined experimentally. In this paper, we review the computational studies that have described how temperature affects the structure and dynamics of thermoenzymes, including the thermoalkalophilic L1 lipase derived from Bacillus stearothermophilus. We will also discuss the potential of using pressure for the analysis of the stability of thermoenzymes because high pressure is also important for the processing and preservation of foods.

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Year:  2014        PMID: 24871480     DOI: 10.1007/s10930-014-9568-8

Source DB:  PubMed          Journal:  Protein J        ISSN: 1572-3887            Impact factor:   2.371


  89 in total

1.  Novel zinc-binding center and a temperature switch in the Bacillus stearothermophilus L1 lipase.

Authors:  Seong-Tae Jeong; Hyung-Kwoun Kim; Seung-Jun Kim; Seung-Wook Chi; Jae-Gu Pan; Tae-Kwang Oh; Seong-Eon Ryu
Journal:  J Biol Chem       Date:  2002-02-21       Impact factor: 5.157

2.  Increasing temperature accelerates protein unfolding without changing the pathway of unfolding.

Authors:  Ryan Day; Brian J Bennion; Sihyun Ham; Valerie Daggett
Journal:  J Mol Biol       Date:  2002-09-06       Impact factor: 5.469

3.  Novel cation-pi interaction revealed by crystal structure of thermoalkalophilic lipase.

Authors:  Hiroyoshi Matsumura; Takahiko Yamamoto; Thean Chor Leow; Tadashi Mori; Abu Bakar Salleh; Mahiran Basri; Tsuyoshi Inoue; Yasushi Kai; Raja Noor Zaliha Raja Abd Rahman
Journal:  Proteins       Date:  2008-02-01

4.  Theoretical study of the partial molar volume change associated with the pressure-induced structural transition of ubiquitin.

Authors:  Takashi Imai; Shusaku Ohyama; Andriy Kovalenko; Fumio Hirata
Journal:  Protein Sci       Date:  2007-07-27       Impact factor: 6.725

Review 5.  Molecular simulation as an aid to experimentalists.

Authors:  Wilfred F van Gunsteren; Jozica Dolenc; Alan E Mark
Journal:  Curr Opin Struct Biol       Date:  2008-02-14       Impact factor: 6.809

6.  Conformational change in the activation of lipase: an analysis in terms of low-frequency normal modes.

Authors:  S Jääskeläinen; C S Verma; R E Hubbard; P Linko; L S Caves
Journal:  Protein Sci       Date:  1998-06       Impact factor: 6.725

Review 7.  Pressure stability of proteins.

Authors:  J L Silva; G Weber
Journal:  Annu Rev Phys Chem       Date:  1993       Impact factor: 12.703

Review 8.  The effect of high pressure upon proteins and other biomolecules.

Authors:  G Weber; H G Drickamer
Journal:  Q Rev Biophys       Date:  1983-02       Impact factor: 5.318

9.  Structural stability of Staphylococcus xylosus lipase is modulated by Zn(2+) ions.

Authors:  Jean Borges Bertoldo; Guilherme Razzera; Javier Vernal; Fábio Cristiano Angonesi Brod; Ana Carolina Maisonnave Arisi; Hernán Terenzi
Journal:  Biochim Biophys Acta       Date:  2011-05-19

10.  A novel alkaliphilic bacillus esterase belongs to the 13(th) bacterial lipolytic enzyme family.

Authors:  Lang Rao; Yanfen Xue; Yingying Zheng; Jian R Lu; Yanhe Ma
Journal:  PLoS One       Date:  2013-04-05       Impact factor: 3.240

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  2 in total

1.  Structural Characterizations of the Fas Receptor and the Fas-Associated Protein with Death Domain Interactions.

Authors:  Urmi Roy
Journal:  Protein J       Date:  2016-02       Impact factor: 2.371

2.  In vitro stability evaluation of coated lipase.

Authors:  Lu Jie Liu; Jia Zhu; Bin Wang; Chu Cheng; Yong Jie Du; Min Qi Wang
Journal:  Asian-Australas J Anim Sci       Date:  2016-08-10       Impact factor: 2.509

  2 in total

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