Bioorthogonal chemistry has become one of the main driving forces in current chemical biology, inspiring the search for novel biocompatible chemospecific reactions for the past decade. Alongside the well-established labeling strategies that originated the bioorthogonal paradigm, we have recently proposed the use of heterogeneous palladium chemistry and bioorthogonal Pd(0)-labile prodrugs to develop spatially targeted therapies. Herein, we report the generation of biologically inert precursors of cytotoxic gemcitabine by introducing Pd(0)-cleavable groups in positions that are mechanistically relevant for gemcitabine's pharmacological activity. Cell viability studies in pancreatic cancer cells showed that carbamate functionalization of the 4-amino group of gemcitabine significantly reduced (>23-fold) the prodrugs' cytotoxicity. The N-propargyloxycarbonyl (N-Poc) promoiety displayed the highest sensitivity to heterogeneous palladium catalysis under biocompatible conditions, with a reaction half-life of less than 6 h. Zebrafish studies with allyl, propargyl, and benzyl carbamate-protected rhodamines confirmed N-Poc as the most suitable masking group for implementing in vivo bioorthogonal organometallic chemistry.
Bioorthogonal chemistry has become one of the main driving forces in current chemical biology, inspiring the search for novel biocompatible chemospecific reactions for the past decade. Alongside the well-established labeling strategies that originated the bioorthogonal paradigm, we have recently proposed the use of heterogeneous palladium chemistry and bioorthogonal Pd(0)-labile prodrugs to develop spatially targeted therapies. Herein, we report the generation of biologically inert precursors of cytotoxic gemcitabine by introducing Pd(0)-cleavable groups in positions that are mechanistically relevant for gemcitabine's pharmacological activity. Cell viability studies in pancreatic cancer cells showed that carbamate functionalization of the 4-amino group of gemcitabine significantly reduced (>23-fold) the prodrugs' cytotoxicity. The N-propargyloxycarbonyl (N-Poc) promoiety displayed the highest sensitivity to heterogeneous palladium catalysis under biocompatible conditions, with a reaction half-life of less than 6 h. Zebrafish studies with allyl, propargyl, and benzyl carbamate-protected rhodamines confirmed N-Poc as the most suitable masking group for implementing in vivo bioorthogonal organometallic chemistry.
Bioorthogonal chemistry
is an emerging field of research that focuses
on the development and application of selective chemical reactions
susceptible to occurring in a biological environment without interfering
with the normal function of its components.[1,2] These
reactions are used as labeling methods to study cell constituents
in their native state, including proteins and biomolecules that cannot
be monitored by genetically encoded reporters (e.g., glycans, lipids,
DNA, etc.).[1−4] Looking beyond the well-established labeling strategies that originated
the bioorthogonal field, the induction of local chemotherapy by biologically
inert means could allow for the reduction of adverse pharmacological
effects in distant organs and tissues. This therapeutic paradigm has
so far reached the clinic with the so-called photodynamic therapy,
a method based on the local generation of cytotoxic reactive oxygen
species by spatially controlled excitation (and subsequent energy
transfer to the molecular oxygen present in the tissue) of a nontoxic
systemically administered photosensitizer with a benign light source.[5] Following the same principle of bioorthogonality,
novel strategies are being currently investigated by several groups
to enable local conversion of chemically masked prodrugs into cytotoxic
small molecules using either harmless electromagnetic radiations[6,7] or biocompatible heterogeneous catalysts.[8]Technically speaking, for a bioorthogonal reaction to be optimal
to living systems, the corresponding nonbiotic reactive partners need
to display (i) high chemical stability to enzymatic processing and
(ii) selective reciprocal reactivity in biocompatible conditions (water,
pH 7.4, isotonicity, and 37 °C). Importantly, the reactants and
the resulting product/s should be nontoxic, unless this is the intended
outcome of the process. The Staudinger ligation and the copper-free
azide alkyne cycloaddition, originally developed by the Bertozzi group,[9−11] are representative examples of such chemistry. In addition to catalyst-free
ligations, the use of transition metals to functionalize biomolecules
or activate fluorogenic probes in living cells has recently emerged
as a new alternative in the field.[8,12,13] These biocompatible processes, also known as bioorthogonal
organometallic (BOOM) reactions,[14] are
mediated by nonbiotic transition metals such as copper(I),[15] ruthenium(II),[16−18] or palladium species[8,14,18−23] and have expanded the diversity of chemical groups and transformations
suitable for use bioorthogonally in cell culture.Aiming to modulate drug activity by an internal self-renewable
control element rather than an external radiation source (e.g., light
in photopharmacology[7]), we have recently
proposed the development of nonbiological transition metals into biocompatible
catalytic devices to allow the activation of systemically administered
prodrugs at the location determined by the device.[8] This bioorthogonally activated chemotherapeutic strategy
would be optimal to implement focalized treatment of unresectable
primary or metastatic tumors and could also find application in the
treatment of other disorders such as local infections, Parkinson’s
disease, cardiovascular disorders, etc. In the seminal investigation
of such an approach,[8] we reported the development
of a selective metallo-substrate (5-fluoro-1-propargyluracil) and
a solid-phase palladium catalyst (Pd0-resins) as a highly
efficient bioorthogonal prodrug/activator system. On the basis of
their complementary chemical roles, cytotoxic 5-fluorouracil was efficiently
generated via extracellular BOOM catalysis in cell culture.[8] Importantly, when each of these reagents was
cultured separately, neither of them exhibited cytotoxicity, demonstrating
the feasibility of the method.To explore this paradigm further,
herein we report a comprehensive
study on the development and evaluation of novel Pd0-labile
prodrugs of gemcitabine (deoxycytidine analogue clinically used to
treat several types of cancers[24]) using
two masking strategies: (i) carbonate formation at the 5′-OH
group of the sugar moiety and (ii) carbamate masking of the 4-NH2 group of the cytosine base (Figure 1).
Figure 1
Gemcitabine and its cytotoxic mode of action. Following cell entry,
gemcitabine is successively phosphorylated by deoxycytidine kinase
at its 5′-OH position to generate cytotoxic metabolites.
Gemcitabine and its cytotoxic mode of action. Following cell entry,
gemcitabine is successively phosphorylated by deoxycytidine kinase
at its 5′-OH position to generate cytotoxic metabolites.
Results and Discussion
Design and Synthesis of
Pd0-Labile Gemcitabine Prodrugs
Gemcitabine (marketed
as Gemzar by Eli Lilly and Co.) is an antimetabolite
antineoplastic agent widely employed, in combination or alone, to
treat several difficult-to-cure cancerous processes (e.g., nonsmall-cell
lung carcinoma, metastatic breast cancer, and ovarian cancer),[24] including being a first-line therapy in the
treatment of pancreatic cancer.[25] It displays
a narrow therapeutic index, with its most severe side effects being
myelosuppression, pulmonary toxicity, and renal failure.[24] Gemcitabine is intracellularly converted by
deoxycytidine kinase into its therapeutically active metabolites,
the 5′-diphosphate and 5′-triphosphate derivatives (Figure 1). Gemcitabine 5′-diphosphate inhibits ribonucleotide
reductase, a strictly conserved enzyme among all living organisms
responsible for regulating the total rate of DNA synthesis, while
the triphosphorylated derivative can become incorporated into the
DNA, thereby inhibiting nuclear replication.[26]On the basis of gemcitabine’s mode of action, masking
the 5′-OH group of its sugar moiety would chemically block
the generation of its cytotoxic metabolites (Figure 1). In a different manner but similarly relevant, modification
of the 4-amino group of the cytosine base would result in a reduction
of the enzyme–substrate recognition. The absence of a free
NH2 group in that position would hinder the formation of
essential hydrogen bonding interactions with the amino acid Asp133
located within the activation site of the enzyme, thus reducing the
efficacy of the phosphorylation process.[27] Furthermore, the main detoxification route of gemcitabine is via
hydrolytic deamination of the 4-NH2 group. This is mediated
in the liver by cytidine deaminase, which irreversibly converts gemcitabine
into its inactive metabolite difluoro-deoxyuridine.[28] Consequently, masking the 4-NH2 group would
result in a doubly beneficial effect to the bioorthogonal strategy:
it would reduce the cytotoxic properties of the resulting prodrug
and protect the circulating drug precursor from premature liver deactivation
before reaching the target tissue.Allyl and propargyloxycarbonyl
groups (Alloc and Poc, respectively)
have been widely employed as OH and NH2 protection strategies[29−32] and have shown sensitivity to palladium catalysis in biocompatible
conditions.[8,14,19] Therefore, both groups were chosen to derivatize gemcitabine 1 into palladium-labile prodrugs. Because of the requirement
of an additional hydrogen source to undergo palladium-mediated cleavage,
the carboxybenzyl group (Cbz) was used to generate control prodrugs
resistant to oxidative catalysis.[29,33] Prodrugs were
synthesized using a semisynthetic strategy by functionalization of
gemcitabine, 1 (Scheme 1). Treatment
of 1 with allyl, propargyl, or benzyl chloroformate in
the presence of DBU formed the corresponding carbonate prodrugs 2a,p,b in moderate yields. To synthesize the 4-carbamate derivatives,
the primary alcohol in position 5′ was first silylated using
TBS-Cl and imidazole, followed by treatment with the corresponding
alkyl chloroformates. TBAF-mediated deprotection yielded the final
carbamate prodrugs 5a,p,b in moderate to good yields.
Scheme 1
Synthesis of Gemcitabine Prodrugs
Reagents
and conditions: (i)
DBU (2.5 equiv), DMF, addition of alkylchloroformate (1.5 equiv) at
4 °C, then r.t. overnight (47–53%); (ii) TBS-Cl (1.1 equiv),
imidazole (3.5 equiv), DMF, r.t., 2.5 h (88%); (iii) pyridine (3.2
equiv), DMF or THF, addition of alkylchloroformate (1.5 equiv) at
4 °C, then r.t. overnight 12–48h (42–69%); (iv)
TBAF (2.5 equiv), THF, r.t., overnight (62–92%).
Synthesis of Gemcitabine Prodrugs
Reagents
and conditions: (i)
DBU (2.5 equiv), DMF, addition of alkylchloroformate (1.5 equiv) at
4 °C, then r.t. overnight (47–53%); (ii) TBS-Cl (1.1 equiv),
imidazole (3.5 equiv), DMF, r.t., 2.5 h (88%); (iii) pyridine (3.2
equiv), DMF or THF, addition of alkylchloroformate (1.5 equiv) at
4 °C, then r.t. overnight 12–48h (42–69%); (iv)
TBAF (2.5 equiv), THF, r.t., overnight (62–92%).
Bioorthogonality Study: Carbonate vs Carbamate Gemcitabine Prodrugs
Although, in principle, the masking of either the 5′-OH
or the 4-NH2 group of gemcitabine could both have a significant
impact on the drug’s antiproliferative properties, the limiting
factor in the development of any bioorthogonally activated prodrug
approach is the stability of the protecting group to enzymatic metabolism.
To determine the robustness of each deactivation strategy in cell
culture, dose–response studies with gemcitabine (1) and prodrugs 2a,p,b and 5a,p,b were carried
out in two human cancer cell lines. Pancreas adenocarcinoma BxPC-3
and Mia PaCa-2 cells were chosen as cell models due to the clinical
relevance of gemcitabine as a first-line drug in pancreatic cancer
therapy.[24,25] As shown in Figure 2, carbamate-protected prodrugs 5a,p,b showed significant
reduction of cytotoxicity relative to that of gemcitabine (EC50 (5a,p,b)/EC50 (1) >
23) in both cell lines, verifying the efficacy of the deactivation
strategy. On the contrary, prodrugs 2a,p,b displayed
cytotoxicity similar to that of gemcitabine (1), suggesting
that these prodrugs are rapidly bioactivated inside cells. These results
are in accordance with the weaker nature of the carbonate bond[32] and strongly indicate that carbonate-based masking
strategies are not suitable for bioorthogonal applications. Consequently,
only carbamate prodrugs 5a,p,b were moved forward in
this study.
Figure 2
Study of the prodrugs’ bioorthogonality. Semilog dose–response
curves and calculated EC50 values of prodrugs 2a,p,b (in gray) and 5a,p,b (in blue) in comparison to those
of unmodified gemcitabine (1, in red) in (a) BxPC-3 and
(b) Mia PaCa-2 cells. Cell viability was measured at day 4 using PrestoBlue
reagent. Error bars: ± SD from n = 3.
Study of the prodrugs’ bioorthogonality. Semilog dose–response
curves and calculated EC50 values of prodrugs 2a,p,b (in gray) and 5a,p,b (in blue) in comparison to those
of unmodified gemcitabine (1, in red) in (a) BxPC-3 and
(b) Mia PaCa-2 cells. Cell viability was measured at day 4 using PrestoBlue
reagent. Error bars: ± SD from n = 3.
Pd0-Mediated
Conversion of Prodrugs 5a,p,b into Gemcitabine
Polystyrene-supported reagents have been
employed for a wide range of cell-based applications and have shown
excellent biocompatibility both in vitro and in vivo.[8,34−36] As catalytically
active Pd0 nanoparticles can be readily generated and trapped
in an amino-functionalized polystyrene matrix,[8,14] Pd0-functionalized resins (150 μm in average diameter,
Figure 3a) were prepared from NovaSyn TG amino
resin HL following the procedure previously reported[8] and used as the heterogeneous palladium source (4.4% w/w
in Pd). To test the susceptibility of the different carbamates to
Pd0-mediated catalysis in a biocompatible environment,
compounds 5a,p,b (100 μM) and Pd0-resins
(1 mg/mL, [Pd0] = 400 μM) were dispersed in PBS (300
mOsm/kg, pH 7.4) and incubated at 37 °C for 24 h (Figure 3b). Reactions were analyzed by HPLC at different
time points (0, 6, and 24 h), with prodrugs 5a,p,b being
retained for 2.56, 2.45, and 2.96 min, respectively, and the gemcitabine
peak appearing at 0.93 min (Figure 3c–f).
Treatment of Cbz-protected compound 5b with the palladium
source produced negligible levels of gemcitabine (1)
after 24 h (Figure 3f), which corresponds with
the need for an additional hydrogen source to achieve reductive cleavage
of Cbz groups.[29,33] On the contrary, incubation of
compounds 5a and 5p with Pd0-resins
led to the generation of significant levels of gemcitabine (1) in less than 24 h (Figure 3d,e).
Interestingly, deprotection of 5p proceeded in a faster
and cleaner manner, with a reaction half-life of <6 h (Figure 3e). These results are in accordance with previous
observations[8,37,38] that have reported the efficient cleavage of various propargylated
compounds by palladium species in biocompatible conditions. A potential
mechanism for this process and for the reported formation of nontoxic
1-hydroxyacetone[8,39] (6) as a reaction
byproduct is proposed in Figure 3g.
Figure 3
Palladium-mediated
conversion assay in cell-free biocompatible
conditions. (a) SEM image of Pd0-resins. Scale bar = 150
μm. (b) Pd0-mediated carbamate cleavage of compounds 5a,p,b. (c) HPLC chromatogram of unmodified gemcitabine (1). (d–f) HPLC chromatograms (UV detector 280 nm) of
100 μM PBS solutions of compounds 5a (left panel), 5p (central panel), and 5b (right panel) treated
with Pd0-resins at 37 °C for 0 h (top), 6 h (central),
and 24 h (bottom). (g) Proposed mechanism for the Pd0-catalyzed
cleavage of O/N-propargyl groups
in water.
Palladium-mediated
conversion assay in cell-free biocompatible
conditions. (a) SEM image of Pd0-resins. Scale bar = 150
μm. (b) Pd0-mediated carbamate cleavage of compounds 5a,p,b. (c) HPLC chromatogram of unmodified gemcitabine (1). (d–f) HPLC chromatograms (UV detector 280 nm) of
100 μM PBS solutions of compounds 5a (left panel), 5p (central panel), and 5b (right panel) treated
with Pd0-resins at 37 °C for 0 h (top), 6 h (central),
and 24 h (bottom). (g) Proposed mechanism for the Pd0-catalyzed
cleavage of O/N-propargyl groups
in water.
Pd0-Mediated
Prodrug Activation in Cell Culture
Bioorthogonal in situ generation of gemcitabine
(1) from the carbamate prodrugs was first investigated
in standard cell culture conditions with BxPC-3 cells using Pd0-resins as the extracellular activating device. Prodrugs 5a,p,b and Pd0-resins were incubated independently
(negative controls) or in combination (BOOM activation assay) and
unmodified gemcitabine (1) used as the positive control.
While neither the prodrugs nor the Pd0-resins exhibited
cytotoxicity, a combination of 5a and 5p with Pd0-resins displayed a strong toxigenic effect (Figure 4), confirming the in situ bioorthogonal
synthesis of cytotoxic gemcitabine (1). In the context
of the present study, “toxigenic effect” describes the
gemcitabine levels generated by each prodrug/Pd0-resin
combination in cell culture which in turn result in a cytotoxic phenotype.
This effect is indirectly quantified by determining the antiproliferative
activity caused by each prodrug/Pd0-resin combination,
which is directly proportional to the concentration of cytotoxic drug
generated, and qualitatively proved by the verification of its mode
of action. Consistent with the anticipated resistance of the N-Cbz functional group to palladium-mediated oxidative cleavage, cells
treated with prodrug 5b and Pd0-resins did
not produce any negative effect on cell viability.
Figure 4
Palladium-mediated conversion
of prodrugs 5a,p,b into
gemcitabine (1) in pancreatic cancer BxPC-3 cells. Experiments:
0.1% (v/v) DMSO (untreated cell control, in gray); 0.67 mg/mL of Pd0-resins (negative control, in black); gemcitabine (100 nM,
positive control, in red); prodrug 5a,p,b (100 nM, negative
control, in blue); and 0.67 mg/mL of Pd0-resins + prodrug 5a,p,b (100 nM, BOOM activation, in green). Cell viability
was measured at day 5 using PrestoBlue reagent. Error bars: ±
SD from n = 3.
Palladium-mediated conversion
of prodrugs 5a,p,b into
gemcitabine (1) in pancreatic cancer BxPC-3 cells. Experiments:
0.1% (v/v) DMSO (untreated cell control, in gray); 0.67 mg/mL of Pd0-resins (negative control, in black); gemcitabine (100 nM,
positive control, in red); prodrug 5a,p,b (100 nM, negative
control, in blue); and 0.67 mg/mL of Pd0-resins + prodrug 5a,p,b (100 nM, BOOM activation, in green). Cell viability
was measured at day 5 using PrestoBlue reagent. Error bars: ±
SD from n = 3.Dose–response studies were subsequently carried out
to compare
the treatment of 5a and 5p/Pd0-resin combinations at different concentrations in two cell lines:
BxPC-3 and Mia PaCa-2 cells. As shown in Figure 5a,b, reduction of cell viability was observed with compounds 5a and 5p only when incubated with Pd0-resins. Analysis of the toxigenic effect displayed by each prodrug/catalyst
combination clearly ranked the N-Poc-protected prodrug 5p as the most effective gemcitabine-generating precursor
in the presence of Pd0-resins, exhibiting analogous cytotoxic
activity to that of the unmodified drug. Importantly, neither the
palladium source nor the prodrugs exhibited antiproliferative activity
when separately incubated at any of the concentrations tested, thus
supporting the bioorthogonality of the strategy. It is important to
note that the combination of N-Alloc-protected prodrug 5a and Pd0-resins resulted in significantly higher
toxigenic effect against BxPC-3 cells than that in Mia PaCa-2 cells.
Since both cell lines display similar sensitivity to unmodified gemcitabine,
these results show that the palladium-mediated cleavage of the N-Alloc group of prodrug 5a is significantly
affected by either the cell type or the culture conditions (BxPC-3
cells are grown in RPMI, while Mia PaCa-2 cells are cultured in DMEM
medium). On the contrary, the combined treatment of 5p and Pd0-resins displayed comparable toxigenic effects
in both cell lines, indicating that the biological environment has
little or no influence on the N-Poc deprotection
process, as would be expected from a truly bioorthogonal reaction.
Figure 5
Bioorthogonally
activated toxigenic effect in cancer cell culture:
(a) BxPC-3 and (b) Mia PaCa-2 cells. Dose–response study: 0.1%
(v/v) DMSO (untreated cell control, in gray); 0.67 mg/mL Pd0-resins (negative control, in black); gemcitabine (positive control,
in red); prodrug 5a,p (negative control, in blue); and
0.67 mg/mL of Pd0-resins + prodrug 5a,p (BOOM
activation, in green). Cell viability was measured at day 5 using
PrestoBlue reagent. Error bars: ± SD from n =
3.
Bioorthogonally
activated toxigenic effect in cancer cell culture:
(a) BxPC-3 and (b) Mia PaCa-2 cells. Dose–response study: 0.1%
(v/v) DMSO (untreated cell control, in gray); 0.67 mg/mL Pd0-resins (negative control, in black); gemcitabine (positive control,
in red); prodrug 5a,p (negative control, in blue); and
0.67 mg/mL of Pd0-resins + prodrug 5a,p (BOOM
activation, in green). Cell viability was measured at day 5 using
PrestoBlue reagent. Error bars: ± SD from n =
3.Real-time monitoring of BxPC-3
cell proliferation using an IncuCyte
ZOOM microscope was performed to compare the effect of each prodrug/catalyst
combination upon the kinetics of tumor cell growth. Time-lapse imaging
of the negative controls 5a and 5p showed
a standard growth curve up to 100% cell confluence level by day 4–5
(light and dark blue curves, respectively; Figure 6), while gemcitabine treatment efficiently suppressed cell
proliferation within 24 h. In accordance with the cell viability studies,
the toxigenic effect mediated by either prodrug 5a or 5p incubated with Pd0-resins (light and dark green
curves, respectively; Figure 6) were patently
different (see Supporting Information for
a motion picture of the IncuCyte experiment). The prodrug 5p/catalyst combination inhibited cell proliferation with the same
efficacy and kinetic response as unmodified gemcitabine (1), proving that cytotoxic levels of the drug were rapidly generated.
Although treatment with the 5a/catalyst combination markedly
delayed BxPC-3 cell growth relative to the negative controls, its
antiproliferative effect was significantly inferior to either the 5p/Pd0-resins combination or unmodified gemcitabine
(1), indicating quantitatively lower levels of active
drug being generated.
Figure 6
Real-time cell confluence study in pancreatic cancer BxPC-3
cells.
The cell population was monitored for 120 h using an IncuCyte ZOOM
system in an incubator (5% CO2 and 37 °C). Drug/prodrug
concentration: 30 nM. Error bars: ± SD from n = 3.
Real-time cell confluence study in pancreatic cancer BxPC-3
cells.
The cell population was monitored for 120 h using an IncuCyte ZOOM
system in an incubator (5% CO2 and 37 °C). Drug/prodrug
concentration: 30 nM. Error bars: ± SD from n = 3.
Study of Cytotoxic Mode
of Action
Double-stranded breaks
caused by DNA damage induce phosphorylation of the variant histone
of the H2A protein family, γ-H2AX. Phosphorylated γ-H2AX
is responsible for recruiting and localizing the DNA repair mechanism.[40] Gemcitabine damages DNA through partial DNA
chain termination and by stalling of replication forks.[41] In order to analyze the toxigenic effect caused
by the prodrug/catalyst combination at the molecular level, immunofluorescence
studies were carried out to probe for phosphorylated γ-H2AX
as a marker of DNA damage in Mia PaCa-2 cells (Figure 7). While the negative controls (Pd0-resins or prodrug 5p separately incubated; Figure 7a,b)
did not show the presence of phosphorylated γ-H2AX in the cell
nuclei, cells treated with either gemcitabine (Figure 7c) or the Pd0-resins + 5p combination
(Figure 7d) expressed significant levels of
phospho-γ-H2AX. This study further illustrates that the cytotoxic
activity generated from the prodrug/catalyst combination and unmodified
gemcitabine is equivalent.
Figure 7
DNA damage study. Merge fluorescent images of
Mia PaCa-2 cells
24 h after treatment with (a) 0.67 mg/mL Pd0-resins (negative
control); (b) prodrug 5p (300 nM, negative control);
(c) gemcitabine (300 nM, positive control); and 0.67 mg/mL of Pd0-resins + prodrug 5p (300 nM, BOOM activation
assay). Fluorescent labels: Hoechst 33342 for cell nuclei (blue),
Alexa Fluor 594 phalloidin for F-actin (red), and anti-phospho-histone
γ-H2AX + Alexa Fluor 488 secondary antibody for phosphorylated
γ-H2AX (green).
DNA damage study. Merge fluorescent images of
Mia PaCa-2 cells
24 h after treatment with (a) 0.67 mg/mL Pd0-resins (negative
control); (b) prodrug 5p (300 nM, negative control);
(c) gemcitabine (300 nM, positive control); and 0.67 mg/mL of Pd0-resins + prodrug 5p (300 nM, BOOM activation
assay). Fluorescent labels: Hoechst 33342 for cell nuclei (blue),
Alexa Fluor 594 phalloidin for F-actin (red), and anti-phospho-histone
γ-H2AX + Alexa Fluor 488 secondary antibody for phosphorylated
γ-H2AX (green).
Pd0-Mediated Probe Activation in Zebrafish
We
have recently shown that catalytically functional Pd0-resins
can be implanted in the yolk sac of zebrafish embryos without
inducing toxicity or affecting the embryo development.[8] To compare the in vivo bioorthogonality
and palladium sensitivity of each of the carbamate protecting groups
under study, N,N′-bis(alkyloxycarbonyl)
rhodamine derivatives 8a,p,b were prepared and used as
off-on fluorescent probes (Figure 8a). Compounds 8a,p,b were synthesized from rhodamine 110, 7, by reaction with the corresponding alkylchloroformate and a base
(triethylamine or pyridine) in dry DMF. The resulting nonfluorescent
rhodamine precursors were incubated with 2-dpf zebrafish embryos containing
either a nonfunctionalized resin (nonactive resin) or a Pd0-resin (active) in the yolk sac for 24 h and subsequently analyzed
by fluorescence microscopy. Zebrafish embryos treated with Alloc-protected
compound 8a showed high levels of fluorescence emission
regardless of the presence or absence of palladium, particularly from
the yolk sac and the digestive system (Figure 8b,c, top panel). Because of the high levels of biochemically generated
fluorescence background, local palladium-mediated activation of 8a within the zebrafish yolk was not detectable, an indication
of the low bioorthogonality of the N-Alloc group
in zebrafish. On the contrary, compounds 8p and 8b showed improved biochemical stability, with the fluorescent
background signal mostly being observed from the digestive system,
which is in accordance with our previous observations.[8] As expected, Cbz-protected compound 8b did
not exhibit sensitivity to palladium catalysis (Figure 8b,c, lower panel), while local palladium-mediated generation
of rhodamine 110 was clearly observed from 8p in the
zebrafish yolk sac containing a Pd0-resin (Figure 8b,c, middle panel). As shown in Figure 8d, image analysis demonstrated up to a 4-fold increase
in fluorescence intensity within close vicinity of the Pd0-resin (blue line). On the contrary, apart from the autofluorescence
intensity typically observed from the nonfunctionalized resin, this
inactive resin did not lead to an increment of fluorescence levels
in the area surrounding it (red line). This study suggests that, from
the carbamate groups herein studied, only the N-Poc
masking strategy would allow generating locally increased concentrations
of a functionally active small molecule by palladium heterogeneous
catalysis in vivo.
Figure 8
Pd0-mediated carbamate cleavage
of rhodamine precursors
in zebrafish. (a) BOOM conversion of nonfluorescent lipophilic compounds 8a,p,b into highly fluorescent hydrophilic rhodamine 110.
(b) 3-dpf zebrafish embryos (n = 5) containing a
nonfunctionalized resin (indicated with white arrows) after incubation
with 5 μM of compounds 8a (top), 8p (middle), and 8b (bottom) for 24 h at 31 °C. (c)
3-dpf zebrafish embryos (n = 5) containing a Pd0-resin (indicated with purple arrows) after incubation with
5 μM of compounds 8a (top), 8p (middle),
and 8b (bottom) for 24 h at 31 °C. Fish were imaged
by phase contrast and fluorescent microscopy (ex., 470/40; em., 525/50).
(d) Analysis of fluorescence intensity/pixel across a horizontal line
of approximately 300 μm drawn in the yolk sac of the zebrafish
embryos and encompassing both the resin and the area surrounding it.
Note: the red and blue lines represent the areas of fluorescence intensity
profile measured over the inactive resin (b, middle right panel) and
the Pd0-resin (c, middle left panel), respectively.
Pd0-mediated carbamate cleavage
of rhodamine precursors
in zebrafish. (a) BOOM conversion of nonfluorescent lipophilic compounds 8a,p,b into highly fluorescent hydrophilic rhodamine 110.
(b) 3-dpf zebrafish embryos (n = 5) containing a
nonfunctionalized resin (indicated with white arrows) after incubation
with 5 μM of compounds 8a (top), 8p (middle), and 8b (bottom) for 24 h at 31 °C. (c)
3-dpf zebrafish embryos (n = 5) containing a Pd0-resin (indicated with purple arrows) after incubation with
5 μM of compounds 8a (top), 8p (middle),
and 8b (bottom) for 24 h at 31 °C. Fish were imaged
by phase contrast and fluorescent microscopy (ex., 470/40; em., 525/50).
(d) Analysis of fluorescence intensity/pixel across a horizontal line
of approximately 300 μm drawn in the yolk sac of the zebrafish
embryos and encompassing both the resin and the area surrounding it.
Note: the red and blue lines represent the areas of fluorescence intensity
profile measured over the inactive resin (b, middle right panel) and
the Pd0-resin (c, middle left panel), respectively.
Conclusions
The
chemical protection of gemcitabine’s 4-amino group as
a carbamate led to a significant reduction of the drug’s cytotoxic
activity. Among the carbamate derivatives investigated, the N-Poc group exhibited the highest sensitivity to palladium-mediated
cleavage at 37 °C in both buffered solution and cell culture.
This is noteworthy since, to date, our group[14,19] and others[12,13,16−18,42−44] have favored the use of N-Alloc groups over N-Poc to implement coupling and decoupling strategies[45] for BOOM studies. Cell viability, time-lapse
microscopy, and DNA damage assays confirmed the bioorthogonal generation
of cytotoxic gemcitabine from the combined treatment of extracellular
Pd0-resins and the N-Poc-protected precursor
in pancreatic cancer cell culture. Unlike the N-Alloc-
and N-Cbz-protected derivatives, the bis-N,N′-Poc-rhodamine 110[8] became locally activated by a Pd0-resin
implanted in the yolk sac of zebrafish embryos, further reinforcing
its nomination as the carbamate group of choice for developing bioorthogonal
studies based on heterogeneous palladium catalysis. Parallel independent
studies from Chen et al. (intracellular protein activation by palladium-mediated
homogeneous catalysis), published just before the submission of this
article,[46] reported analogous findings
with the N-Poc group. Finally, the simplicity of
the masking strategy together with the biocompatibility and efficacy
of the palladium-mediated deprotection process underlines the potential
of this method to modulate the pharmacodynamics and pharmacokinetics
of amino-containing drugs.
Experimental Procedures
Synthetic
Procedures
General Methods
Chemicals and solvents were purchased
from Fisher Scientific, Sigma-Aldrich, or VWR International Ltd. Gemcitabine
HCl was purchased from Shandong Boyuan Pharmaceutical Co. Ltd. NMR
spectra were recorded at ambient temperature on a 500 MHz Bruker Avance
III spectrometer. Chemical shifts are reported in parts per million
(ppm) relative to the solvent peak. Rf values were determined on Merck TLC Silica gel 60 F254 plates under
a 254 nm UV source. Purification was carried out by flash column chromatography
using commercially available silica gel (220–440 mesh, Sigma-Aldrich).
All compounds used in the biological experiments were >95% pure,
as
measured by HPLC using an evaporative light scattering detector. Method:
eluent A, water and formic acid (0.1%); eluent B, acetonitrile and
formic acid (0.1%); A/B = 95:5 to 5:95 in 3 min, isocratic 1 min,
5:95 to 95:5 in 1 min, and isocratic 1 min.
Synthesis of Pd0-Resins
Pd0-functionalized
resins were prepared from NovaSyn TG amino resin HL (0.39 mmol NH2/g) as previously described.[8]
Synthesis of Carbonate-Protected Derivatives 2a,p,b
Gemcitabine HCl (150 mg, 0.5 mmol) was dissolved in dry
DMF (3 mL) with DBU (194 μL, 1.30 mmol) under N2 atmosphere.
The mixture was then cooled to 4 °C in an ice bath. Allyl, propargyl,
or benzyl chloroformate (0.75 mmol) was added dropwise to the mixture.
The mixture was stirred overnight and allowed to warm up to room temperature
(r.t.). The solvents were then removed in vacuo,
the crude redissolved with 25% isopropanol (IPA) in CHCl3 (20 mL), and washed with H2O (20 mL). The aqueous layer
was washed with 25% IPA in CHCl3 (3 × 20 mL) and the
combined organic layers dried over MgSO4, filtered, and
concentrated in vacuo.
Synthesis of Carbamate-Protected Derivatives 5a,p,b
Synthesis of Silylated Derivative 3
Gemcitabine
HCl (500 mg, 1.67 mmol) was dissolved in dry DMF (5 mL) with imidazole
(398 mg, 5.85 mmol) and TBS-Cl (301 mg, 2.0 mmol) stirred at r.t.
overnight. The mixture was then concentrated in vacuo, redissolved in EtOAc (50 mL), and washed with H2O (50
mL). The aqueous layer was washed twice with EtOAc and, subsequently,
the organic layers combined, washed with brine (150 mL), and dried
over MgSO4. The crude was purified by column chromatography
(eluent 8% MeOH in DCM) to yield intermediate 3 as a
white solid 552 mg (88%). 1H NMR (500 MHz, DMSO) δ
7.63 (d, J = 7.5, 1H), 7.38 (s, 2H), 6.31 (d, J = 5.1, 1H), 6.14 (t, J = 7.7, 1H), 5.76
(d, J = 7.5, 1H), 4.19–4.06 (m, 1H), 3.95
(d, J = 11.8, 1H), 3.90–3.77 (m, 2H), 0.90
(s, 9H), 0.09 (d, J = 2.1, 6H). 13C NMR
(126 MHz, DMSO) δ 165.58 (C), 154.56 (C), 139.91 (CH), 122.95
(t, J = 258.3,
C), 94.51 (CH), 83.45 (t, J = 31.5, CH), 79.76 (CH), 68.23 (t, J = 22.7, CH), 60.72 (CH2), 25.71 (CH3), 17.99 (C), −5.52(CH3)3, −5.63 (CH3)2. MS (ESI) m/z 378.0 [M + H]+.
Synthesis of Intermediate 4a
Compound 3 (100 mg, 0.27 mmol) was dissolved in dry THF (2.5 mL) with
pyridine (61 μL, 0.75 mmol) and the mixture cooled to 4 °C
in an ice bath. Allyl chloroformate (55 μL, 0.52 mmol) was added
dropwise to the mixture and stirred for 1 h. The solvent was removed in vacuo and purified via flash chromatography (eluent:
3% MeOH in DCM) to yield compound 4a as a white solid.
Compound 3 (100 mg, 0.27 mmol) was dissolved in dry DMF (2.5 mL) with
pyridine (61 μL, 0.75 mmol) and the mixture cooled to 4 °C
in an ice bath. Propargyl (63 μL, 0.65 mmol) or benzyl chloroformate
(56 μL, 0.39 mmol) was added dropwise to the mixture. The mixture
was stirred at r.t. overnight (for 4b) or for 48 h (for 4p). The solvents were removed and the mixture redissolved
with EtOAc (30 mL) and washed with H2O (30 mL). The aqueous
layer was washed twice more with EtOAc (30 mL each) and the combined
organic layers dried over MgSO4, solids filtered off, and
concentrated in vacuo. The crude was purified via
flash chromatography (eluent: 3% MeOH in DCM) to yield compounds 4p,b as white solids.
Probes 8a(14) and 8p(8) were prepared from rhodamine 110 chloride, 7, as previously described.[14,8]
Synthesis
of Nonfluorescent Probe 8b
Under
a nitrogen atmosphere, rhodamine 110 chloride (150 mg, 0.41 mmol)
was dissolved in dry DMF (4 mL). Separately, benzyl chloroformate
(350 μL, 2.45 mmol) and pyridine (298 μL, 3.69 mmol) were
dissolved in DMF (1 mL) and added dropwise to the mixture. The reaction
mixture was stirred at r.t. for 48 h, solvents removed in
vacuo, and the resulting crude resuspended in 25% isopropanol
in CHCl3 (30 mL) and washed with H2O. The aqueous
layer was then washed 5 times with 25% isopropanol in CHCl3 (30 mL). The combined organic layers were dried over anhydrous MgSO4 and the solids filtered off and concentrated in vacuo. The crude was purified via flash chromatography (hexane/ethyl acetate
2:1) to yield bis-N,N′-benzyloxycarbonyl-rhodamine
110 (8b) as a white solid (31 mg, 13%). Rf 0.23 (hexane/ethyl acetate 2:1); 1H NMR (500
MHz, DMSO) δ 10.12 (s, 2H), 8.01 (d, J = 7.6,
1H), 7.78 (t, J = 7.1, 1H), 7.72 (t, J = 7.3, 1H), 7.58 (d, J = 1.7, 2H), 7.45–7.33
(m, 10H), 7.27 (d, J = 7.6, 1H), 7.20–7.12
(m, 2H), 6.70 (d, J = 8.7, 2H), 5.18 (s, 4H). 13C NMR (126 MHz, DMSO) δ 168.66 (C), 153.25 (C)2, 152.51 (C)2, 150.94 (C), 141.43 (C)2, 136.31 (C)2, 135.71 (CH), 130.21 (CH), 128.53 (CH)2,
128.47 (CH)4 128.19 (CH)4, 128.14 (CH)2 125.71 (C), 124.77
(CH), 123.95 (CH), 114.46 (CH)2, 112.48 (C)2, 105.10 (CH)2, 81.94 (C), 66.07 (CH2)2. MS (ESI) m/z 597.2 [M
– H]−.
Biological Studies
General
Methods
Cell lines were grown in culture media
supplemented with serum (10% FBS) and l-glutamine (2 mM)
and incubated in a tissue culture incubator at 37 °C and 5% CO2. Human pancreas adenocarcinoma BxPC-3 cells (a kind gift
from Dr. Mark Duxbury) were cultured in Roswell Park Memorial Institute
(RPMI) media. Human pancreatic carcinoma Mia PaCa-2 cells (a kind
gift from Dr. Simon Wilkinson) were cultured in Dulbecco’s
modified Eagle’s media (DMEM).
Cell Viability Studies
Cells were seeded in a 96 well
plate format at the appropriate cell concentration (2,500 cells/well
for BxPC-3 cells and 1,000 cells/well for MiaPaCa-2 cells) and incubated
for 48 h before treatment. Each well was then replaced with fresh
media containing compound 1 or 2a,p,b/5a,p,b and incubated for 4 days. Untreated cells were incubated
with DMSO (0.1% v/v). PrestoBlue cell viability reagent (10% v/v)
was added to each well and the plate incubated for 1 h. Fluorescence
emission was detected using a PerkinElmer Victor[2] multilabel reader (excitation filter at 540 nm and emissions
filter at 590 nm). All conditions were normalized to the untreated
cells (100%) and curves fitted using GraphPad Prism using a sigmoidal
variable slope curve.
Pd0-Mediated Deprotection of 5a,p,b in
Biocompatible Conditions
Compounds 5a, 5p, and 5b (100 μM) were dissolved in PBS
(1 mL) with 1 mg of Pd0-resins and shaken at 1400 rpm and
37 °C in a Thermomixer. Reaction crudes were monitored at 0,
6, 24, and 48 h by analytical HPLC (Agilent) using an UV detector
at 280 nm to avoid the detection of PBS salts. Eluent A, water and
formic acid (0.1%); eluent B, acetonitrile and formic acid (0.1%);
A/B = 95:5 to 5:95 in 3 min, isocratic 1 min, 5:95 to 95:5 in 1 min,
and isocratic 1 min.
Pd0-Mediated Dealkylation of 5a,p,b in
Cell Culture
BxPC-3 and MiaPaCa-2 cells were plated as described
before. Each well was then replaced with fresh media containing Pd0-resins (0.67 mg/mL) with DMSO (0.1% v/v); 5a,p,b (3, 10, 30, 100, and 300 nM) with DMSO (0.1% v/v); gemcitabine (3,
10, 30, 100, and 300 nM) with DMSO (0.1% v/v); or a combination of
0.67 mg/mL of Pd0-resins + 5a,p,b (3, 10,
30, 100, and 300 nM) with DMSO (0.1% v/v). Untreated cells were incubated
with DMSO (0.1% v/v).
Cell Viability Assay
Cells were
incubated with drugs
for 5 days. PrestoBlue cell viability reagent (10% v/v) was added
to each well and the plate incubated for 60 min. Fluorescence emission
was detected and results normalized as described above.
Time-Lapse
Imaging Study
BxPC-3 cell growth studies
were carried out at a single dose of gemcitabine (1) or 5a,p (30 nM). Each well was imaged every 3 h over 5 d under standard
incubation conditions using an IncuCyte ZOOM microscope (placed inside
the incubator). Image-based analysis of cell confluence and Supporting Information movie 1 were produced
using the IncuCyte software.
DNA Damage Study
Mia PaCa-2 cells were seeded in an
8-well chamber slide with a density of 2,000 cells/well and incubated
for 48 h prior to treatment. Each well was then replaced with fresh
media containing 0.1% DMSO (v/v) and the following treatments: Pd0-resins (0.67 mg/mL); 5p (300 nM); 1 (300 nM); or a combination of Pd0-resin + 5p (300 nM). The combination of 5p and Pd0 resins
were incubated for 24 h at 37 °C prior to treatment with cells.
Following 24 h of treatment, cells were fixed with paraformaldehyde
(4%, 20 min) and permeabilized cells (Triton X-100, 0.1%) subsequently
treated with rabbit monoclonal antibody against Phospho-Histone H2AX
(Ser139) (1:400, Cell Signaling Technologies, cat. no. 9718) for 1
h at room temperature. This was followed by 1 h of incubation at room
temperature with secondary Alexa Fluor 488 linked antibody (1:1000,
goat antirabbit, IgG, Life Technologies), Hoechst 33342 (1:8000, Life
Technologies), and Alexa Fluor 594 Phalloidin (1:500, Life Technologies).
Cells seeded in the chamber slide were imaged using an Olympus FV1000
microscope and merged using the ImageJ software (National Institutes
of Health).
Zebrafish Studies
Wild type zebrafish
embryos were
collected from AB-TPL breeding pairs and reared at 28 °C in E3
embryo medium. Twenty-four hours postfertilization, embryos were treated
with the anesthetic tricaine and pierced in the yolk with a fine needle.
Either nonfunctionalized resin or a Pd0-resin was then
rapidly inserted into the yolk. Embryos that lost significant yolk
in the procedure were removed from the experiment. Embryos were then
gently transferred to fresh E3 medium and returned to 28 °C to
ensure the yolk wound was closed. The corresponding probe (8a,p,b) was added to the embryo medium (final concentration 5 μM)
and fish incubated for additional 24 h at 31 °C. Fish were imaged
using fluorescent microscopy (Olympus Scan-R). The fold change in
fluorescence with the Pd0 resin + 8p in comparison
to that with the inactive resin + 8p were quantified
using ImageJ software. A line was drawn horizontally over the yolk
sac of the embryo encompassing both the resin beads and the area surrounding
them (Figure 8b,c), and the pixel intensities
along the lines were calculated (Figure 8d).
Experiments were repeated at least twice with n =
4/per condition. Zebrafish husbandry and experiments were performed
under Home Office License in compliance with the Animals (Scientific
Procedures) Act 1986 and approved by the University of Edinburgh Ethics
Committee.
Authors: Michael A Plunk; Alyssa Alaniz; Olatunde P Olademehin; Thomas L Ellington; Kevin L Shuford; Robert R Kane Journal: ACS Med Chem Lett Date: 2020-01-03 Impact factor: 4.345
Authors: Rui Huang; Cheng-Hsuan Li; Roberto Cao-Milán; Luke D He; Jessa Marie Makabenta; Xianzhi Zhang; Erlei Yu; Vincent M Rotello Journal: J Am Chem Soc Date: 2020-06-08 Impact factor: 15.419