Literature DB >> 24865771

Re-analysis of omics data indicates Smithella may degrade alkanes by addition to fumarate under methanogenic conditions.

Boonfei Tan1, Camilla Nesbø2, Julia Foght1.   

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Year:  2014        PMID： 24865771      PMCID： PMC4260707          DOI： 10.1038/ismej.2014.87

Source DB:  PubMed          Journal:  ISME J        ISSN： 1751-7362            Impact factor:   10.302


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  10 in total

1.  Stereochemical investigations reveal the mechanism of the bacterial activation of n-alkanes without oxygen.

Authors:  René Jarling; Masih Sadeghi; Marta Drozdowska; Sven Lahme; Wolfgang Buckel; Ralf Rabus; Friedrich Widdel; Bernard T Golding; Heinz Wilkes
Journal:  Angew Chem Int Ed Engl       Date:  2011-11-30       Impact factor: 15.336

2.  New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0.

Authors:  Stéphane Guindon; Jean-François Dufayard; Vincent Lefort; Maria Anisimova; Wim Hordijk; Olivier Gascuel
Journal:  Syst Biol       Date:  2010-03-29       Impact factor: 15.683

3.  Single-cell genome and metatranscriptome sequencing reveal metabolic interactions of an alkane-degrading methanogenic community.

Authors:  Mallory Embree; Harish Nagarajan; Narjes Movahedi; Hamidreza Chitsaz; Karsten Zengler
Journal:  ISME J       Date:  2013-10-24       Impact factor: 10.302

4.  Methane formation from long-chain alkanes by anaerobic microorganisms.

Authors:  K Zengler; H H Richnow; R Rosselló-Mora; W Michaelis; F Widdel
Journal:  Nature       Date:  1999-09-16       Impact factor: 49.962

5.  The genome sequence of Desulfatibacillum alkenivorans AK-01: a blueprint for anaerobic alkane oxidation.

Authors:  A V Callaghan; B E L Morris; I A C Pereira; M J McInerney; R N Austin; J T Groves; J J Kukor; J M Suflita; L Y Young; G J Zylstra; B Wawrik
Journal:  Environ Microbiol       Date:  2011-06-08       Impact factor: 5.491

6.  The formate channel FocA exports the products of mixed-acid fermentation.

Authors:  Wei Lü; Juan Du; Nikola J Schwarzer; Elke Gerbig-Smentek; Oliver Einsle; Susana L A Andrade
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-30       Impact factor: 11.205

7.  Metagenomic analysis of an anaerobic alkane-degrading microbial culture: potential hydrocarbon-activating pathways and inferred roles of community members.

Authors:  Boonfei Tan; Xiaoli Dong; Christoph W Sensen; Julia Foght
Journal:  Genome       Date:  2013-05-30       Impact factor: 2.166

8.  The quantitative significance of Syntrophaceae and syntrophic partnerships in methanogenic degradation of crude oil alkanes.

Authors:  N D Gray; A Sherry; R J Grant; A K Rowan; C R J Hubert; C M Callbeck; C M Aitken; D M Jones; J J Adams; S R Larter; I M Head
Journal:  Environ Microbiol       Date:  2011-09-14       Impact factor: 5.491

9.  DNA-SIP reveals that Syntrophaceae play an important role in methanogenic hexadecane degradation.

Authors:  Lei Cheng; Chen Ding; Qiang Li; Qiao He; Li-Rong Dai; Hui Zhang
Journal:  PLoS One       Date:  2013-07-01       Impact factor: 3.240

10.  Enzymes involved in the anaerobic oxidation of n-alkanes: from methane to long-chain paraffins.

Authors:  Amy V Callaghan
Journal:  Front Microbiol       Date:  2013-05-14       Impact factor: 5.640
  10 in total
  22 in total

1.  Methanogenic Degradation of Long n-Alkanes Requires Fumarate-Dependent Activation.

Authors:  Jia-Heng Ji; Yi-Fan Liu; Lei Zhou; Serge Maurice Mbadinga; Pan Pan; Jing Chen; Jin-Feng Liu; Shi-Zhong Yang; Wolfgang Sand; Ji-Dong Gu; Bo-Zhong Mu
Journal:  Appl Environ Microbiol       Date:  2019-08-01       Impact factor: 4.792

2.  Enrichment and Characterization of a Psychrotolerant Consortium Degrading Crude Oil Alkanes Under Methanogenic Conditions.

Authors:  Chen Ding; Tingting Ma; Anyi Hu; Lirong Dai; Qiao He; Lei Cheng; Hui Zhang
Journal:  Microb Ecol       Date:  2015-03-18       Impact factor: 4.552

3.  Investigating the Microbial Degradation Potential in Oil Sands Fluid Fine Tailings Using Gamma Irradiation: A Metagenomic Perspective.

Authors:  Danielle VanMensel; Subba Rao Chaganti; Ryan Boudens; Thomas Reid; Jan Ciborowski; Christopher Weisener
Journal:  Microb Ecol       Date:  2017-03-01       Impact factor: 4.552

Review 4.  A review of methods and databases for metagenomic classification and assembly.

Authors:  Florian P Breitwieser; Jennifer Lu; Steven L Salzberg
Journal:  Brief Bioinform       Date:  2019-07-19       Impact factor: 11.622

5.  Methanogenic Paraffin Biodegradation: Alkylsuccinate Synthase Gene Quantification and Dicarboxylic Acid Production.

Authors:  Lisa K Oberding; Lisa M Gieg
Journal:  Appl Environ Microbiol       Date:  2017-12-15       Impact factor: 4.792

6.  Comparative analysis of metagenomes from three methanogenic hydrocarbon-degrading enrichment cultures with 41 environmental samples.

Authors:  Boonfei Tan; S Jane Fowler; Nidal Abu Laban; Xiaoli Dong; Christoph W Sensen; Julia Foght; Lisa M Gieg
Journal:  ISME J       Date:  2015-03-03       Impact factor: 10.302

Review 7.  The anaerobic degradation of gaseous, nonmethane alkanes - From in situ processes to microorganisms.

Authors:  Florin Musat
Journal:  Comput Struct Biotechnol J       Date:  2015-03-19       Impact factor: 7.271

8.  Insights into the Anaerobic Biodegradation Pathway of n-Alkanes in Oil Reservoirs by Detection of Signature Metabolites.

Authors:  Xin-Yu Bian; Serge Maurice Mbadinga; Yi-Fan Liu; Shi-Zhong Yang; Jin-Feng Liu; Ru-Qiang Ye; Ji-Dong Gu; Bo-Zhong Mu
Journal:  Sci Rep       Date:  2015-05-13       Impact factor: 4.379

9.  Anaerolineaceae and Methanosaeta turned to be the dominant microorganisms in alkanes-dependent methanogenic culture after long-term of incubation.

Authors:  Bo Liang; Li-Ying Wang; Serge Maurice Mbadinga; Jin-Feng Liu; Shi-Zhong Yang; Ji-Dong Gu; Bo-Zhong Mu
Journal:  AMB Express       Date:  2015-06-18       Impact factor: 3.298

10.  Draft Genome Sequences of Three Smithella spp. Obtained from a Methanogenic Alkane-Degrading Culture and Oil Field Produced Water.

Authors:  BoonFei Tan; Renata de Araújo E Silva; Trent Rozycki; Camilla Nesbø; Julia Foght
Journal:  Genome Announc       Date:  2014-10-23
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