Literature DB >> 24860385

N,N'-(Ethane-1,2-di-yl)di-benzene-carbo-thio-amide.

Masayuki Nagasawa1, Yuji Sasanuma1, Hyuma Masu2.   

Abstract

The title compound, C16H16N2S2, adopts a gauche (+)-gauche (+)-gauche (+) (g(+)g(+)g(+) ) conformation in the n class="Disease">NH-CH2-CH2-NH bond sequence. In the crystal, mol-ecules are connected by pairs of N-H⋯S=C hydrogen bonds and C-H⋯π inter-actions, forming a tape structure along the c-axis direction.

Entities:  

Year:  2014        PMID: 24860385      PMCID: PMC4011219          DOI: 10.1107/S1600536814008368

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For crystal structures and conformations of related compounds with –(C=X)–C6H4–(C=X)–Y–(CH2)–Y– (X = O or S and Y = O, S, or NH) bond sequences, see for example,: Palmer & Brisse (1980 ▶); Brisson & Brisse (1986 ▶); Abe et al. (2011 ▶); Abe & Sasanuma (2012 ▶, 2013 ▶). For the synthesis, see: Jacobson et al. (1987 ▶).

Experimental

Crystal data

C16H16N2S2 M = 300.43 Triclinic, a = 8.6652 (1) Å b = 9.4596 (1) Å c = 10.3457 (1) Å α = 105.5452 (7)° β = 98.9293 (7)° γ = 101.5370 (6)° V = 780.67 (2) Å3 Z = 2 Cu Kα radiation μ = 3.01 mm−1 T = 223 K 0.20 × 0.05 × 0.05 mm

Data collection

Bruker APEXII Ultra CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.58, T max = 0.86 10280 measured reflections 2763 independent reflections 2568 reflections with I > 2σ(I) R int = 0.014

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.083 S = 1.04 2763 reflections 181 parameters H-atom parameters constrained Δρmax = 0.28 e Å−3 Δρmin = −0.18 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAIn class="Chemical">NT; program(s) used to solve structure: SHELXS2013 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL2013. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814008368/is5357sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814008368/is5357Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814008368/is5357Isup3.cml CCDC reference: 997112 Additional supporting information: crystallographic information; 3D view; checkCIF report
C16H16N2S2V = 780.67 (2) Å3
Mr = 300.43Z = 2
Triclinic, P1F(000) = 316
a = 8.6652 (1) ÅDx = 1.278 Mg m3
b = 9.4596 (1) ÅCu Kα radiation, λ = 1.54178 Å
c = 10.3457 (1) ŵ = 3.01 mm1
α = 105.5452 (7)°T = 223 K
β = 98.9293 (7)°Needle, yellow
γ = 101.5370 (6)°0.20 × 0.05 × 0.05 mm
Bruker APEXII Ultra CCD area-detector diffractometer2763 independent reflections
Radiation source: Bruker TXS fine-focus rotating anode2568 reflections with I > 2σ(I)
Bruker Helios multilayer mirror monochromatorRint = 0.014
φ and ω scansθmax = 68.2°, θmin = 4.6°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −10→10
Tmin = 0.58, Tmax = 0.86k = −11→11
10280 measured reflectionsl = −10→12
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.029H-atom parameters constrained
wR(F2) = 0.083w = 1/[σ2(Fo2) + (0.0481P)2 + 0.2337P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
2763 reflectionsΔρmax = 0.28 e Å3
181 parametersΔρmin = −0.18 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 was performed with all reflections. The weighted R-factor (wR) and goodness of fit (S) are based on F2, while the R-factor on F. The threshold expression of F2 > 2.0 σ(F2) was used only for calculating R-factor.
xyzUiso*/Ueq
C10.55284 (15)0.70259 (14)0.66245 (14)0.0269 (3)
C20.39798 (16)0.74362 (15)0.62755 (14)0.0267 (3)
C30.25373 (17)0.65794 (16)0.63997 (14)0.0306 (3)
H30.25430.57620.67520.037*
C40.10937 (17)0.69267 (17)0.60064 (16)0.0356 (3)
H40.01210.63410.60860.043*
C50.10820 (18)0.81363 (18)0.54961 (16)0.0373 (3)
H50.01010.83690.52260.045*
C60.25101 (18)0.90021 (18)0.53830 (17)0.0379 (3)
H60.25010.98290.50440.046*
C70.39529 (17)0.86538 (16)0.57682 (15)0.0325 (3)
H70.49220.92440.56870.039*
C80.71343 (18)0.60757 (18)0.82305 (15)0.0353 (3)
H8A0.72370.61940.92130.042*
H8B0.81190.67070.81210.042*
C90.69808 (19)0.44220 (18)0.74548 (16)0.0374 (3)
H9A0.70120.43250.64930.045*
H9B0.79030.41040.78550.045*
C100.52445 (19)0.29310 (17)0.85582 (15)0.0360 (3)
C110.35708 (19)0.20806 (17)0.84557 (15)0.0363 (3)
C120.2252 (2)0.25356 (18)0.79138 (16)0.0400 (4)
H120.24170.33540.75560.048*
C130.0696 (2)0.1792 (2)0.78978 (18)0.0504 (4)
H13−0.01870.21210.75480.06*
C140.0438 (2)0.0564 (2)0.8396 (2)0.0569 (5)
H14−0.06180.00580.83830.068*
C150.1734 (3)0.0089 (2)0.89112 (19)0.0553 (5)
H150.1559−0.07560.92350.066*
C160.3285 (2)0.08408 (19)0.89556 (17)0.0453 (4)
H160.41620.05170.93260.054*
N10.57488 (14)0.66031 (14)0.77434 (12)0.0312 (3)
H10.50120.66420.82260.037*
N20.54942 (16)0.34276 (14)0.75044 (12)0.0361 (3)
H20.47020.31330.67850.043*
S10.68758 (4)0.70858 (4)0.56244 (4)0.03447 (12)
S20.67017 (5)0.32702 (6)0.99595 (4)0.04788 (14)
U11U22U33U12U13U23
C10.0259 (6)0.0285 (6)0.0259 (7)0.0067 (5)0.0055 (5)0.0083 (5)
C20.0270 (6)0.0306 (6)0.0236 (7)0.0092 (5)0.0072 (5)0.0080 (5)
C30.0319 (7)0.0325 (7)0.0311 (8)0.0095 (6)0.0100 (6)0.0130 (6)
C40.0262 (7)0.0414 (8)0.0396 (9)0.0069 (6)0.0104 (6)0.0125 (6)
C50.0299 (7)0.0492 (9)0.0379 (9)0.0186 (6)0.0074 (6)0.0154 (7)
C60.0407 (8)0.0415 (8)0.0422 (9)0.0190 (7)0.0127 (7)0.0220 (7)
C70.0303 (7)0.0356 (7)0.0366 (8)0.0092 (6)0.0116 (6)0.0164 (6)
C80.0350 (7)0.0483 (8)0.0265 (8)0.0169 (6)0.0040 (6)0.0146 (6)
C90.0429 (8)0.0509 (9)0.0288 (8)0.0240 (7)0.0129 (6)0.0176 (6)
C100.0488 (9)0.0408 (8)0.0268 (8)0.0243 (7)0.0112 (6)0.0129 (6)
C110.0507 (9)0.0385 (8)0.0238 (8)0.0186 (7)0.0097 (6)0.0102 (6)
C120.0493 (9)0.0439 (8)0.0310 (8)0.0175 (7)0.0090 (7)0.0142 (6)
C130.0482 (10)0.0628 (11)0.0392 (10)0.0172 (8)0.0077 (7)0.0128 (8)
C140.0600 (11)0.0595 (11)0.0434 (11)0.0015 (9)0.0154 (8)0.0110 (8)
C150.0809 (14)0.0453 (9)0.0417 (10)0.0100 (9)0.0196 (9)0.0175 (8)
C160.0657 (11)0.0440 (9)0.0324 (9)0.0218 (8)0.0114 (7)0.0158 (7)
N10.0325 (6)0.0418 (6)0.0256 (6)0.0160 (5)0.0096 (5)0.0140 (5)
N20.0444 (7)0.0439 (7)0.0251 (6)0.0188 (6)0.0073 (5)0.0138 (5)
S10.02655 (19)0.0504 (2)0.0359 (2)0.01414 (15)0.01281 (14)0.02216 (16)
S20.0469 (2)0.0748 (3)0.0317 (2)0.0247 (2)0.00711 (17)0.0264 (2)
C1—N11.3216 (17)C9—H9A0.98
C1—C21.4882 (18)C9—H9B0.98
C1—S11.6783 (13)C10—N21.3278 (19)
C2—C71.3906 (19)C10—C111.484 (2)
C2—C31.3915 (19)C10—S21.6791 (15)
C3—C41.384 (2)C11—C121.390 (2)
C3—H30.94C11—C161.397 (2)
C4—C51.384 (2)C12—C131.386 (2)
C4—H40.94C12—H120.94
C5—C61.381 (2)C13—C141.385 (3)
C5—H50.94C13—H130.94
C6—C71.382 (2)C14—C151.376 (3)
C6—H60.94C14—H140.94
C7—H70.94C15—C161.377 (3)
C8—N11.4598 (17)C15—H150.94
C8—C91.523 (2)C16—H160.94
C8—H8A0.98N1—H10.87
C8—H8B0.98N2—H20.87
C9—N21.452 (2)
N1—C1—C2115.89 (11)N2—C9—H9B109.2
N1—C1—S1123.18 (10)C8—C9—H9B109.2
C2—C1—S1120.93 (10)H9A—C9—H9B107.9
C7—C2—C3119.15 (12)N2—C10—C11116.16 (13)
C7—C2—C1119.98 (12)N2—C10—S2122.96 (13)
C3—C2—C1120.82 (12)C11—C10—S2120.86 (11)
C4—C3—C2120.26 (13)C12—C11—C16118.40 (16)
C4—C3—H3119.9C12—C11—C10120.86 (13)
C2—C3—H3119.9C16—C11—C10120.69 (14)
C5—C4—C3120.02 (13)C13—C12—C11120.52 (15)
C5—C4—H4120.0C13—C12—H12119.7
C3—C4—H4120.0C11—C12—H12119.7
C6—C5—C4120.08 (13)C14—C13—C12120.19 (17)
C6—C5—H5120.0C14—C13—H13119.9
C4—C5—H5120.0C12—C13—H13119.9
C5—C6—C7120.05 (13)C15—C14—C13119.69 (18)
C5—C6—H6120.0C15—C14—H14120.2
C7—C6—H6120.0C13—C14—H14120.2
C6—C7—C2120.42 (13)C14—C15—C16120.44 (17)
C6—C7—H7119.8C14—C15—H15119.8
C2—C7—H7119.8C16—C15—H15119.8
N1—C8—C9112.27 (12)C15—C16—C11120.74 (16)
N1—C8—H8A109.1C15—C16—H16119.6
C9—C8—H8A109.1C11—C16—H16119.6
N1—C8—H8B109.1C1—N1—C8124.96 (12)
C9—C8—H8B109.1C1—N1—H1117.5
H8A—C8—H8B107.9C8—N1—H1117.5
N2—C9—C8112.14 (12)C10—N2—C9125.36 (13)
N2—C9—H9A109.2C10—N2—H2117.3
C8—C9—H9A109.2C9—N2—H2117.3
N1—C1—C2—C7140.90 (14)S2—C10—C11—C16−38.65 (19)
S1—C1—C2—C7−39.89 (17)C16—C11—C12—C131.3 (2)
N1—C1—C2—C3−41.60 (18)C10—C11—C12—C13−176.08 (15)
S1—C1—C2—C3137.61 (12)C11—C12—C13—C14−1.4 (3)
C7—C2—C3—C40.8 (2)C12—C13—C14—C150.2 (3)
C1—C2—C3—C4−176.74 (13)C13—C14—C15—C161.1 (3)
C2—C3—C4—C5−0.4 (2)C14—C15—C16—C11−1.2 (3)
C3—C4—C5—C6−0.2 (2)C12—C11—C16—C150.0 (2)
C4—C5—C6—C70.6 (2)C10—C11—C16—C15177.37 (15)
C5—C6—C7—C2−0.2 (2)C2—C1—N1—C8176.47 (13)
C3—C2—C7—C6−0.5 (2)S1—C1—N1—C8−2.7 (2)
C1—C2—C7—C6177.09 (13)C9—C8—N1—C1−79.82 (18)
N1—C8—C9—N2−55.40 (17)C11—C10—N2—C9172.70 (13)
N2—C10—C11—C12−39.7 (2)S2—C10—N2—C9−5.6 (2)
S2—C10—C11—C12138.62 (13)C8—C9—N2—C10−79.40 (17)
N2—C10—C11—C16143.00 (15)
D—H···AD—HH···AD···AD—H···A
N1—H1···S2i0.872.563.4186 (13)168
N2—H2···S1ii0.872.583.4097 (13)159
C8—H8A···Cg2i0.992.783.5376 (17)134
C9—H9A···Cg1i0.992.873.6685 (17)140
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C2–C7 and C11–C16 phenyl rings, respectively.

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯S2i 0.872.563.4186 (13)168
N2—H2⋯S1ii 0.872.583.4097 (13)159
C8—H8ACg2i 0.992.783.5376 (17)134
C9—H9ACg1i 0.992.873.6685 (17)140

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Ethane-1,2-diyl bis-(benzene-dithio-ate).

Authors:  Daisuke Abe; Yuji Sasanuma; Hiroyasu Sato
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-26

3.  S,S'-Butane-1,4-diyl bis-(benzene-carbo-thio-ate).

Authors:  Daisuke Abe; Yuji Sasanuma
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-10-05
  3 in total
  1 in total

1.  N,N'-(Propane-1,3-di-yl)dibenzo-thio-amide.

Authors:  Masayuki Nagasawa; Yuji Sasanuma; Hyuma Masu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-05-03
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.