Literature DB >> 24860381

4-(4-Bromo-phen-yl)-7,7-dimethyl-2-methyl-amino-3-nitro-7,8-di-hydro-4H-chromen-5(6H)-one including an unknown solvate.

S Antony Inglebert1, Jayabal Kamalraja2, K Sethusankar3, Gnanasambandam Vasuki2.   

Abstract

In the title compound, C18H19BrN2O4, the chromene unit is not quite planar (r.m.s. deviation = 0.199 Å), with the methyl C atoms lying 0.027 (4) and 1.929 (4) Å from the mean plane of the chromene unit. The six-membered carbocyclic ring of the chromene moiety adopts an envelope conformation, with the dimethyl-substituted C atom as the flap. The methyl-amine and nitro groups are slightly twisted from the chromene moiety, with C-N-C-O and O-N-C-C torsion angles of 2.7 (4) and -0.4 (4)°, respectively. The dihedral angle between the mean plane of the chromene unit and the benzene ring is 85.61 (13)°. An intra-molecular N-H⋯O hydrogen bond generates an S(6) ring motif, which stabilizes the mol-ecular conformation. In the crystal, mol-ecules are linked via N-H⋯O hydrogen bonds, forming hexa-gonal rings lying parallel to the ab plane. A region of disordered electron density, most probably disordered ethanol solvent mol-ecules, occupying voids of ca 432 Å(3) for an electron count of 158, was treated using the SQUEEZE routine in PLATON [Spek (2009 ▶). Acta Cryst. D65, 148-155]. Their formula mass and unit-cell characteristics were not taken into account during refinement.

Entities:  

Year:  2014        PMID: 24860381      PMCID: PMC4011266          DOI: 10.1107/S1600536814007983

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological and pharmacological properties of chromene and chromene derivatives, see: Thomas & Zachariah (2013 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶). For ring puckering parameters, see: Cremer & Pople (1975 ▶). For a related structure, see: Narayanan et al. (2013 ▶).

Experimental

Crystal data

C18H19BrN2O4 M = 407.26 Trigonal, a = 24.2105 (13) Å c = 15.7745 (9) Å V = 8007.4 (8) Å3 Z = 18 Mo Kα radiation μ = 2.34 mm−1 T = 293 K 0.35 × 0.30 × 0.30 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.446, T max = 0.496 25281 measured reflections 3206 independent reflections 2565 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.105 S = 1.09 3206 reflections 233 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.68 e Å−3 Δρmin = −0.61 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814007983/su2714sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814007983/su2714Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814007983/su2714Isup3.cml CCDC reference: 996468 Additional supporting information: crystallographic information; 3D view; checkCIF report
C18H19BrN2O4Dx = 1.520 Mg m3
Mr = 407.26Mo Kα radiation, λ = 0.71073 Å
Trigonal, R3Cell parameters from 3206 reflections
Hall symbol: -R 3θ = 2.3–25.2°
a = 24.2105 (13) ŵ = 2.34 mm1
c = 15.7745 (9) ÅT = 293 K
V = 8007.4 (8) Å3Block, colourless
Z = 180.35 × 0.30 × 0.30 mm
F(000) = 3744
Bruker Kappa APEXII CCD diffractometer3206 independent reflections
Radiation source: fine-focus sealed tube2565 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.035
ω and φ scanθmax = 25.2°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −28→29
Tmin = 0.446, Tmax = 0.496k = −29→28
25281 measured reflectionsl = −12→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.105H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.0569P)2 + 9.8133P] where P = (Fo2 + 2Fc2)/3
3206 reflections(Δ/σ)max < 0.001
233 parametersΔρmax = 0.68 e Å3
0 restraintsΔρmin = −0.61 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.212132 (19)0.139268 (18)0.68871 (2)0.06222 (17)
O10.43022 (10)0.17889 (10)0.40027 (13)0.0472 (5)
O20.26619 (8)0.05160 (8)0.21543 (11)0.0321 (4)
O30.42426 (10)0.09139 (10)0.35374 (13)0.0447 (5)
O40.27248 (10)0.24234 (10)0.29435 (14)0.0504 (5)
N10.40219 (10)0.12873 (11)0.35810 (13)0.0354 (5)
N20.32782 (12)0.01391 (11)0.25833 (16)0.0374 (6)
H2N0.3582 (17)0.0173 (16)0.287 (2)0.056 (10)*
C10.24640 (15)0.14478 (14)0.57850 (17)0.0399 (7)
C20.30235 (15)0.19826 (14)0.55683 (18)0.0439 (7)
H20.32380.23100.59580.053*
C30.32632 (14)0.20269 (13)0.47641 (17)0.0390 (7)
H30.36430.23890.46130.047*
C40.29519 (12)0.15445 (12)0.41766 (16)0.0301 (6)
C50.23957 (13)0.10049 (13)0.44189 (18)0.0397 (7)
H50.21860.06720.40350.048*
C60.21442 (15)0.09504 (15)0.52256 (19)0.0455 (7)
H60.17690.05870.53840.055*
C70.32208 (12)0.16060 (12)0.32833 (15)0.0293 (6)
H7A0.35730.20440.32090.035*
C80.34739 (12)0.11581 (12)0.31480 (15)0.0297 (6)
C90.31590 (12)0.06113 (12)0.26513 (16)0.0297 (6)
C100.24637 (12)0.09617 (12)0.21277 (15)0.0278 (6)
C110.27201 (11)0.14784 (12)0.26209 (15)0.0281 (5)
C120.24891 (12)0.19332 (12)0.25304 (16)0.0313 (6)
C130.19699 (12)0.17837 (12)0.18972 (17)0.0336 (6)
H13A0.21650.19940.13670.040*
H13B0.17140.19630.20990.040*
C140.15270 (12)0.10710 (13)0.17229 (17)0.0335 (6)
C150.19391 (12)0.07738 (13)0.15019 (17)0.0321 (6)
H15A0.16740.03130.14940.039*
H15B0.21190.09120.09400.039*
C160.10934 (15)0.09891 (16)0.0969 (2)0.0502 (8)
H16A0.08110.05430.08660.075*
H16B0.13500.11820.04750.075*
H16C0.08480.11910.10950.075*
C170.11220 (14)0.07477 (14)0.2504 (2)0.0458 (7)
H17A0.08500.03010.23930.069*
H17B0.08660.09370.26360.069*
H17C0.13950.08020.29760.069*
C180.29496 (15)−0.04065 (14)0.2025 (2)0.0477 (8)
H18A0.3047−0.07300.21890.072*
H18B0.3086−0.02780.14520.072*
H18C0.2498−0.05730.20660.072*
U11U22U33U12U13U23
Br10.0846 (3)0.0630 (3)0.0458 (2)0.0419 (2)0.02115 (17)0.00610 (15)
O10.0358 (11)0.0452 (13)0.0568 (13)0.0174 (10)−0.0149 (10)−0.0151 (10)
O20.0316 (10)0.0282 (10)0.0418 (10)0.0190 (8)−0.0093 (8)−0.0064 (8)
O30.0418 (12)0.0528 (13)0.0520 (12)0.0330 (11)−0.0116 (9)−0.0050 (10)
O40.0536 (13)0.0335 (12)0.0689 (14)0.0254 (10)−0.0152 (11)−0.0155 (10)
N10.0303 (12)0.0409 (14)0.0338 (12)0.0169 (12)−0.0007 (10)0.0019 (10)
N20.0382 (14)0.0366 (14)0.0460 (13)0.0254 (12)−0.0108 (11)−0.0049 (11)
C10.0492 (18)0.0427 (17)0.0363 (14)0.0294 (15)0.0069 (13)0.0028 (12)
C20.0535 (19)0.0352 (16)0.0377 (15)0.0183 (15)−0.0045 (14)−0.0096 (12)
C30.0381 (16)0.0269 (15)0.0414 (15)0.0082 (13)−0.0028 (12)−0.0038 (11)
C40.0296 (14)0.0278 (14)0.0359 (13)0.0168 (12)−0.0028 (11)−0.0024 (11)
C50.0357 (16)0.0311 (15)0.0422 (15)0.0091 (13)−0.0017 (12)−0.0066 (12)
C60.0372 (17)0.0399 (17)0.0494 (17)0.0119 (14)0.0076 (13)0.0037 (14)
C70.0261 (13)0.0250 (13)0.0344 (13)0.0109 (11)−0.0002 (10)−0.0011 (11)
C80.0241 (13)0.0335 (14)0.0315 (13)0.0143 (12)−0.0012 (10)0.0003 (11)
C90.0244 (13)0.0325 (14)0.0337 (13)0.0153 (12)0.0009 (10)0.0022 (11)
C100.0259 (13)0.0253 (13)0.0345 (13)0.0145 (11)0.0022 (10)0.0019 (10)
C110.0238 (13)0.0261 (14)0.0343 (13)0.0125 (11)0.0019 (10)0.0011 (11)
C120.0302 (14)0.0252 (14)0.0386 (14)0.0140 (12)0.0026 (11)−0.0001 (11)
C130.0338 (15)0.0304 (14)0.0423 (15)0.0203 (13)0.0041 (12)0.0037 (12)
C140.0286 (14)0.0297 (14)0.0445 (15)0.0164 (12)−0.0025 (12)0.0002 (11)
C150.0308 (14)0.0314 (14)0.0371 (14)0.0177 (12)−0.0062 (11)−0.0057 (11)
C160.0410 (17)0.0495 (19)0.067 (2)0.0275 (16)−0.0180 (15)−0.0085 (16)
C170.0321 (16)0.0385 (17)0.0652 (19)0.0164 (14)0.0095 (14)0.0054 (14)
C180.0516 (19)0.0396 (17)0.0617 (19)0.0302 (16)−0.0143 (15)−0.0141 (15)
Br1—C11.902 (3)C7—H7A0.9800
O1—N11.247 (3)C8—C91.392 (4)
O2—C91.356 (3)C10—C111.334 (3)
O2—C101.384 (3)C10—C151.489 (3)
O3—N11.261 (3)C11—C121.470 (4)
O4—C121.217 (3)C12—C131.501 (4)
N1—C81.382 (3)C13—C141.534 (4)
N2—C91.316 (3)C13—H13A0.9700
N2—C181.450 (4)C13—H13B0.9700
N2—H2N0.83 (3)C14—C171.525 (4)
C1—C21.369 (4)C14—C161.532 (4)
C1—C61.377 (4)C14—C151.534 (4)
C2—C31.377 (4)C15—H15A0.9700
C2—H20.9300C15—H15B0.9700
C3—C41.382 (4)C16—H16A0.9600
C3—H30.9300C16—H16B0.9600
C4—C51.381 (4)C16—H16C0.9600
C4—C71.528 (3)C17—H17A0.9600
C5—C61.388 (4)C17—H17B0.9600
C5—H50.9300C17—H17C0.9600
C6—H60.9300C18—H18A0.9600
C7—C81.504 (4)C18—H18B0.9600
C7—C111.511 (3)C18—H18C0.9600
C9—O2—C10120.62 (19)C10—C11—C7123.0 (2)
O1—N1—O3120.5 (2)C12—C11—C7118.7 (2)
O1—N1—C8118.5 (2)O4—C12—C11120.7 (2)
O3—N1—C8120.9 (2)O4—C12—C13121.3 (2)
C9—N2—C18125.6 (2)C11—C12—C13118.1 (2)
C9—N2—H2N116 (2)C12—C13—C14114.9 (2)
C18—N2—H2N119 (2)C12—C13—H13A108.6
C2—C1—C6121.7 (3)C14—C13—H13A108.6
C2—C1—Br1119.0 (2)C12—C13—H13B108.6
C6—C1—Br1119.3 (2)C14—C13—H13B108.6
C1—C2—C3118.9 (3)H13A—C13—H13B107.5
C1—C2—H2120.6C17—C14—C16109.7 (2)
C3—C2—H2120.6C17—C14—C15110.2 (2)
C2—C3—C4121.4 (3)C16—C14—C15109.1 (2)
C2—C3—H3119.3C17—C14—C13109.9 (2)
C4—C3—H3119.3C16—C14—C13109.5 (2)
C5—C4—C3118.4 (2)C15—C14—C13108.4 (2)
C5—C4—C7120.9 (2)C10—C15—C14111.2 (2)
C3—C4—C7120.7 (2)C10—C15—H15A109.4
C4—C5—C6121.2 (3)C14—C15—H15A109.4
C4—C5—H5119.4C10—C15—H15B109.4
C6—C5—H5119.4C14—C15—H15B109.4
C1—C6—C5118.4 (3)H15A—C15—H15B108.0
C1—C6—H6120.8C14—C16—H16A109.5
C5—C6—H6120.8C14—C16—H16B109.5
C8—C7—C11109.2 (2)H16A—C16—H16B109.5
C8—C7—C4111.6 (2)C14—C16—H16C109.5
C11—C7—C4111.0 (2)H16A—C16—H16C109.5
C8—C7—H7A108.3H16B—C16—H16C109.5
C11—C7—H7A108.3C14—C17—H17A109.5
C4—C7—H7A108.3C14—C17—H17B109.5
N1—C8—C9120.0 (2)H17A—C17—H17B109.5
N1—C8—C7117.3 (2)C14—C17—H17C109.5
C9—C8—C7122.6 (2)H17A—C17—H17C109.5
N2—C9—O2111.5 (2)H17B—C17—H17C109.5
N2—C9—C8128.2 (2)N2—C18—H18A109.5
O2—C9—C8120.3 (2)N2—C18—H18B109.5
C11—C10—O2122.2 (2)H18A—C18—H18B109.5
C11—C10—C15126.8 (2)N2—C18—H18C109.5
O2—C10—C15110.9 (2)H18A—C18—H18C109.5
C10—C11—C12118.2 (2)H18B—C18—H18C109.5
C6—C1—C2—C31.3 (5)C7—C8—C9—N2−169.2 (3)
Br1—C1—C2—C3−178.6 (2)N1—C8—C9—O2−172.9 (2)
C1—C2—C3—C4−0.1 (5)C7—C8—C9—O211.0 (4)
C2—C3—C4—C5−1.3 (4)C9—O2—C10—C11−4.3 (4)
C2—C3—C4—C7179.2 (3)C9—O2—C10—C15176.5 (2)
C3—C4—C5—C61.5 (4)O2—C10—C11—C12178.4 (2)
C7—C4—C5—C6−179.0 (3)C15—C10—C11—C12−2.6 (4)
C2—C1—C6—C5−1.2 (5)O2—C10—C11—C7−3.5 (4)
Br1—C1—C6—C5178.8 (2)C15—C10—C11—C7175.5 (2)
C4—C5—C6—C1−0.3 (5)C8—C7—C11—C1012.9 (3)
C5—C4—C7—C8−69.8 (3)C4—C7—C11—C10−110.6 (3)
C3—C4—C7—C8109.7 (3)C8—C7—C11—C12−169.0 (2)
C5—C4—C7—C1152.3 (3)C4—C7—C11—C1267.5 (3)
C3—C4—C7—C11−128.2 (3)C10—C11—C12—O4−177.2 (3)
O1—N1—C8—C9178.2 (2)C7—C11—C12—O44.6 (4)
O3—N1—C8—C9−0.4 (4)C10—C11—C12—C131.0 (3)
O1—N1—C8—C7−5.5 (3)C7—C11—C12—C13−177.2 (2)
O3—N1—C8—C7176.0 (2)O4—C12—C13—C14−154.1 (3)
C11—C7—C8—N1167.3 (2)C11—C12—C13—C1427.6 (3)
C4—C7—C8—N1−69.6 (3)C12—C13—C14—C1768.6 (3)
C11—C7—C8—C9−16.5 (3)C12—C13—C14—C16−170.8 (2)
C4—C7—C8—C9106.6 (3)C12—C13—C14—C15−51.9 (3)
C18—N2—C9—O22.7 (4)C11—C10—C15—C14−23.9 (4)
C18—N2—C9—C8−177.2 (3)O2—C10—C15—C14155.2 (2)
C10—O2—C9—N2−179.4 (2)C17—C14—C15—C10−71.9 (3)
C10—O2—C9—C80.5 (3)C16—C14—C15—C10167.6 (2)
N1—C8—C9—N26.9 (4)C13—C14—C15—C1048.5 (3)
D—H···AD—HH···AD···AD—H···A
N2—H2N···O30.83 (3)2.00 (3)2.618 (3)130 (3)
N2—H2N···O4i0.83 (3)2.38 (3)2.969 (3)129 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2N⋯O30.83 (3)2.00 (3)2.618 (3)130 (3)
N2—H2N⋯O4i 0.83 (3)2.38 (3)2.969 (3)129 (3)

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  4-(4-Bromo-phen-yl)-2-methyl-amino-3-nitro-5,6,7,8-tetra-hydro-4H-chromen-5-one.

Authors:  P Narayanan; Jayabal Kamalraja; Paramasivam T Perumal; K Sethusankar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-05-22

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total
  2 in total

1.  7,7-Dimethyl-2-methyl-amino-4-(4-methyl-phenyl)-3-nitro-7,8-di-hydro-4H-chromen-5(6H)-one.

Authors:  S Antony Inglebert; Jayabal Kamalraja; K Sethusankar; Paramasivam T Perumal
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-05-24

2.  Crystal structure of 4-(4-meth-oxy-phen-yl)-7,7-dimethyl-2-methyl-amino-3-nitro-7,8-di-hydro-4H-chromen-5(6H)-one.

Authors:  S Antony Inglebert; Jayabal Kamalraja; K Sethusankar; Paramasivam T Perumal
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-08-01
  2 in total

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