Literature DB >> 24860308

Poly[diaquatris(μ6-4,6-dioxo-1,4,5,6-tetra-hydro-1,3,5-triazine-2-carboxylato)tripotassium].

Sarra Soudani1, Emmanuel Aubert2, Emmanuel Wenger2, Christian Jelsch2, Isabelle Gautier-Luneau3, Cherif Ben Nasr1.   

Abstract

The asymmetric unit of the title compound, [K3(C4H2N3O4)3(H2O)2] n , contains two potassium cations (one in general position, one located on a twofold rotation axis), one and a half oxonate anions (the other half generated by twofold symmetry) and one water mol-ecule. As a result of the twofold symmetry, one H atom of the symmetric anion is statistically occupied. Both potassium cations are surrounded by eight oxygen atoms in the form of distorted polyhedra. Adjacent cations are inter-connected by oxygen bridges, generating layers parallel to (100). The aromatic ring system of the oxonate anions link these layers into a network structure. The crystal packing is stabilized by N-H⋯O, O-H⋯O and O-H⋯N hydrogen bonds, three of which are bifurcated. In addition, inter-molecular π-π stacking inter-actions exist between neighboring aromatic rings with a centroid-centroid distance of 3.241 (2) Å.

Entities:  

Year:  2014        PMID: 24860308      PMCID: PMC4011208          DOI: 10.1107/S1600536814007569

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of metal-organic coordination materials, see: Yaghi et al. (2003 ▶); Janiak (2003 ▶); Lalart et al. (1981 ▶); Mori et al. (2005 ▶, 2006 ▶); Dybtsev et al. (2004 ▶). For studies and properties of oxonic acid, see: Lalart et al. (1981 ▶); Pancheva (1977 ▶); Cihak et al. (1968 ▶). For comparable inter­atomic distances in related structures, see: Sheldrick & Poonia (1986 ▶); Cuesta et al. (2003 ▶); Pike (1976 ▶). For π–π stacking inter­actions, see: Janiak (2000 ▶). For a multipolar atom model transfered from the ELMAM2 electron density database, see: Domagała et al. (2012 ▶). For fractal analysis of the residual electron density, see: Meindl & Henn (2008 ▶).

Experimental

Crystal data

[K3(C4H2N3O4)3(H2O)2] M = 621.55 Monoclinic, a = 7.0284 (2) Å b = 7.6736 (2) Å c = 19.2668 (4) Å β = 99.355 (2)° V = 1025.30 (5) Å3 Z = 2 Mo Kα radiation μ = 0.77 mm−1 T = 110 K 0.16 × 0.13 × 0.07 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2012 ▶) T min = 0.887, T max = 0.948 34196 measured reflections 2953 independent reflections 2637 reflections with > 2.0σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.067 S = 0.93 2953 reflections 190 parameters 14 restraints Only H-atom coordinates refined Δρmax = 0.50 e Å−3 Δρmin = −0.36 e Å−3 Data collection: APEX2 (Bruker, 2012 ▶); cell refinement: SAINT (Bruker, 2012 ▶); data reduction: SAINT; program(s) used to solve structure: MoPro (Jelsch et al., 2005 ▶); program(s) used to refine structure: MoPro; molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: MoPro. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814007569/wm5013sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814007569/wm5013Isup2.hkl CCDC reference: 995461 Additional supporting information: crystallographic information; 3D view; checkCIF report
[K3(C4H2N3O4)3(H2O)2]Z = 4
Mr = 310.77F(000) = 628
Monoclinic, P2/cDx = 2.013 Mg m3
Hall symbol: -P 2ycMo Kα radiation, λ = 0.71073 Å
a = 7.0284 (2) Åθ = 2.7–31.0°
b = 7.6736 (2) ŵ = 0.77 mm1
c = 19.2668 (4) ÅT = 110 K
β = 99.355 (2)°Prism, colourless
V = 1025.30 (5) Å30.16 × 0.13 × 0.07 mm
Bruker APEXII CCD diffractometer2953 independent reflections
Radiation source: fine-focus sealed tube2637 reflections with > 2.0σ(I)
Mirror monochromatorRint = 0.038
ω scansθmax = 30.4°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Bruker, 2012)h = −9→9
Tmin = 0.887, Tmax = 0.948k = 0→10
34196 measured reflectionsl = 0→27
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.027Hydrogen site location: difference Fourier map
wR(F2) = 0.067Only H-atom coordinates refined
S = 0.93w = 1/[σ2(Fo2) + (0.04P)2 + 0.5P] where P = (Fo2 + 2Fc2)/3
2953 reflections(Δ/σ)max = 0.005
190 parametersΔρmax = 0.50 e Å3
14 restraintsΔρmin = −0.36 e Å3
Refinement. Refinement of F2 against reflections. The threshold expression of F2 > σ(F2) is used for calculating R-factors(gt) and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
K1_11.08353 (4)0.48766 (4)0.412084 (14)0.01245 (4)
K2_210.11136 (5)0.250000.01989 (6)
O8_31.45467 (13)−0.43420 (12)0.40758 (5)0.01477 (13)
O9_31.76362 (13)−0.39318 (12)0.45621 (5)0.01479 (13)
O10_31.88936 (13)0.20722 (12)0.47622 (5)0.01638 (13)
O11_31.25768 (13)0.18741 (12)0.37279 (5)0.01419 (13)
N1_31.41234 (15)−0.07072 (14)0.40074 (5)0.00943 (13)
N3_31.73874 (15)−0.05408 (13)0.45147 (5)0.00987 (14)
N5_31.57096 (15)0.20278 (14)0.42495 (5)0.00984 (14)
C2_31.57561 (17)−0.14319 (16)0.42608 (6)0.00913 (16)
C4_31.74401 (17)0.12642 (15)0.45228 (6)0.01027 (16)
C6_31.40543 (17)0.11050 (16)0.39764 (6)0.00935 (15)
C7_31.59851 (17)−0.34380 (16)0.43032 (6)0.00942 (16)
H3_31.8583 (19)−0.121 (2)0.4729 (8)0.01180*
H5_31.559 (3)0.3346 (13)0.4231 (9)0.01177*
N12_40.66429 (16)0.65016 (15)0.27330 (6)0.01528 (15)
N14_40.500000.3866 (2)0.250000.0163 (2)
C13_40.500000.7302 (2)0.250000.0151 (3)
C15_40.6706 (2)0.46992 (18)0.27535 (7)0.01688 (19)
C5_40.500000.9310 (3)0.250000.0207 (3)
O16_40.34766 (19)1.00230 (15)0.22125 (6)0.0303 (2)
O17_40.81757 (16)0.38998 (15)0.29846 (6)0.03083 (18)
H14_40.500000.253 (2)0.250000.01920*
H12_40.7874 (15)0.7204 (7)0.287 (2)0.01819*0.50
O18_51.05599 (15)0.78304 (15)0.32766 (6)0.02606 (16)
H18A_51.173 (2)0.828 (3)0.3556 (10)0.03898*
H18B_50.953 (2)0.845 (3)0.3439 (10)0.03898*
U11U22U33U12U13U23
K1_10.00912 (12)0.01238 (13)0.01537 (13)0.00076 (9)0.00058 (9)0.00085 (9)
K2_20.0193 (2)0.01123 (18)0.0248 (2)0−0.00922 (16)0
O8_30.0112 (4)0.0094 (4)0.0229 (5)−0.0023 (3)0.0001 (3)−0.0009 (4)
O9_30.0117 (4)0.0102 (4)0.0209 (4)0.0021 (3)−0.0020 (3)0.0011 (3)
O10_30.0091 (4)0.0102 (4)0.0273 (5)−0.0019 (3)−0.0046 (3)0.0019 (4)
O11_30.0112 (4)0.0110 (4)0.0184 (4)0.0029 (3)−0.0034 (3)−0.0010 (3)
N1_30.0074 (4)0.0077 (4)0.0124 (4)0.0005 (4)−0.0009 (3)0.0000 (4)
N3_30.0073 (4)0.0069 (4)0.0145 (5)−0.0002 (3)−0.0012 (4)0.0007 (4)
N5_30.0078 (4)0.0076 (5)0.0131 (4)0.0005 (4)−0.0014 (4)0.0007 (4)
C2_30.0076 (5)0.0069 (5)0.0122 (5)−0.0010 (4)−0.0004 (4)−0.0007 (4)
C4_30.0079 (5)0.0065 (5)0.0155 (5)0.0002 (4)−0.0008 (4)0.0008 (4)
C6_30.0078 (5)0.0087 (5)0.0109 (5)−0.0001 (4)−0.0005 (4)−0.0006 (4)
C7_30.0086 (5)0.0062 (5)0.0132 (5)−0.0002 (4)0.0013 (4)−0.0002 (4)
N12_40.0117 (5)0.0110 (5)0.0231 (5)−0.0020 (4)0.0024 (4)−0.0021 (4)
N14_40.0195 (8)0.0079 (7)0.0186 (7)0−0.0051 (6)0
C13_40.0180 (9)0.0093 (8)0.0198 (8)00.0090 (7)0
C15_40.0156 (6)0.0120 (6)0.0200 (6)0.0032 (5)−0.0062 (5)−0.0028 (5)
C5_40.0336 (11)0.0083 (8)0.0244 (9)00.0178 (8)0
O16_40.0455 (7)0.0169 (5)0.0337 (6)0.0130 (5)0.0218 (5)0.0081 (4)
O17_40.0267 (6)0.0269 (6)0.0325 (6)0.0161 (5)−0.0144 (5)−0.0108 (5)
O18_50.0161 (5)0.0236 (5)0.0345 (6)−0.0058 (4)−0.0076 (4)0.0098 (4)
K1_1—K1_1i3.7662 (3)N1_3—C2_31.297 (2)
K1_1—K2_2ii4.2236 (3)N3_3—C4_31.386 (2)
K1_1—O17_42.7419 (9)N3_3—C2_31.356 (2)
K1_1—O11_32.7714 (7)N3_3—H3_31.015 (19)
K1_1—O18_52.7782 (9)N5_3—C4_31.375 (2)
K1_1—O10_3iii2.9272 (7)N5_3—C6_31.390 (2)
K1_1—O10_3iv3.1649 (6)N5_3—H5_31.015 (19)
K1_1—O9_3v2.6893 (6)C2_3—C7_31.549 (2)
K1_1—O9_3vi2.6893 (6)N12_4—C15_41.384 (2)
K2_2—O17_42.7342 (9)N12_4—C13_41.320 (2)
K2_2—O11_32.7972 (7)N12_4—H12_41.016 (18)
K2_2—O16_4vii2.7236 (9)N14_4—C15_41.376 (2)
K1_1—O8_3viii2.6916 (6)N14_4—C15_4xii1.376 (2)
K2_2—O18_5ix2.9240 (6)N14_4—H14_41.03 (3)
K2_2—O18_5x2.9240 (6)C13_4—N12_4xii1.320 (2)
K2_2—O17_4ii2.7342 (9)C13_4—C5_41.541 (3)
K2_2—O11_3ii2.7972 (6)C15_4—O17_41.222 (3)
O8_3—C7_31.246 (2)C5_4—O16_41.249 (2)
O9_3—C7_31.245 (2)C5_4—O16_4xii1.249 (2)
O10_3—K1_1xi2.9272 (7)O16_4—K2_2xiii2.7236 (9)
O10_3—C4_31.220 (2)O17_4—K1_12.7419 (9)
O11_3—K1_12.7714 (7)O17_4—K2_22.7342 (9)
O11_3—K2_22.7972 (7)O18_5—K1_12.7782 (9)
O11_3—C6_31.222 (2)O18_5—H18B_50.96 (3)
N1_3—C6_31.392 (2)O18_5—H18A_50.97 (3)
O17_4—K1_1—O11_380.13 (3)C6_3—N5_3—H5_3116 (4)
O17_4—K1_1—O18_577.41 (3)C15_4—N12_4—C13_4119.8 (2)
O17_4—K1_1—O10_3iii80.33 (3)C15_4—N12_4—H12_4120 (1)
O11_3—K1_1—O18_5120.67 (3)C13_4—N12_4—H12_4120 (1)
O11_3—K1_1—O10_3iii76.18 (4)C15_4—N14_4—C15_4xii124.6 (5)
O18_5—K1_1—O10_3iii148.7 (2)C15_4—N14_4—H14_4117.7 (2)
O17_4—K2_2—O11_379.81 (4)C15_4xii—N14_4—H14_4117.7 (2)
O17_4—K2_2—O16_4vii71.63 (4)N12_4xii—C13_4—C5_4117.7 (4)
O11_3—K2_2—O16_4vii111.78 (4)O17_4—C15_4—N14_4122.2 (5)
K1_1xi—O10_3—C4_3129.30 (5)O17_4—C15_4—N12_4122.2 (5)
C6_3—N1_3—C2_3117.8 (4)O16_4—C5_4—O16_4xii128.0 (6)
C4_3—N3_3—C2_3121.8 (4)O16_4—C5_4—C13_4115.98 (11)
C4_3—N3_3—H3_3118.9 (9)O16_4xii—C5_4—C13_4116.0 (5)
C2_3—N3_3—H3_3119.2 (9)K2_2xiii—O16_4—C5_4141.0 (2)
C4_3—N5_3—C6_3124.2 (4)H18B_5—O18_5—H18A_5105 (5)
C4_3—N5_3—H5_3120 (4)
K1_1—O17_4—K2_2—O11_35.20 (14)N1_3—C6_3—N5_3—C4_32.8 (3)
K1_1—O17_4—C15_4—N14_4−141.9 (5)N1_3—C6_3—N5_3—H5_3−178.2 (7)
K1_1—O17_4—C15_4—N12_437.7 (3)N1_3—C2_3—N3_3—C4_3−0.1 (3)
K1_1—O11_3—K2_2—O17_4−5.11 (14)N1_3—C2_3—N3_3—H3_3177 (2)
K1_1—O11_3—C6_3—N5_3−38.9 (3)N3_3—C4_3—N5_3—C6_3−1.1 (3)
K1_1—O11_3—C6_3—N1_3139.8 (5)N3_3—C4_3—N5_3—H5_3180 (2)
K2_2—O17_4—K1_1—O11_3−5.25 (14)N3_3—C2_3—N1_3—C6_31.8 (3)
K2_2—O17_4—K1_1—O18_5119.46 (17)N5_3—C4_3—N3_3—C2_3−0.3 (3)
K2_2—O17_4—C15_4—N14_447.3 (3)N5_3—C4_3—N3_3—H3_3−177 (2)
K2_2—O17_4—C15_4—N12_4−133.1 (5)N5_3—C6_3—N1_3—C2_3−3.1 (3)
K2_2—O11_3—K1_1—O17_45.09 (14)C4_3—N3_3—C2_3—C7_3−179.5 (3)
K2_2—O11_3—K1_1—O18_5−63.78 (12)C6_3—O11_3—K1_1—O17_4−177.7 (3)
K2_2—O11_3—C6_3—N5_3137.5 (4)C6_3—O11_3—K1_1—O18_5113.4 (4)
K2_2—O11_3—C6_3—N1_3−43.7 (3)C6_3—O11_3—K2_2—O17_4177.5 (3)
O8_3—C7_3—C2_3—N3_3−179.6 (2)C6_3—N1_3—C2_3—C7_3−178.8 (2)
O8_3—C7_3—C2_3—N1_30.9 (3)C7_3—C2_3—N3_3—H3_3−3 (4)
O9_3—C7_3—C2_3—N3_3−0.2 (4)N12_4—C15_4—N14_4—H14_4179.05 (3)
O9_3—C7_3—C2_3—N1_3−179.7 (4)N12_4—C13_4—C5_4—O16_4173.1 (3)
O10_3—C4_3—N5_3—C6_3179.966 (4)N14_4—C15_4—N12_4—C13_41.9 (4)
O10_3—C4_3—N5_3—H5_31 (4)N14_4—C15_4—N12_4—H12_4−174 (3)
O10_3—C4_3—N3_3—C2_3178.64 (8)C13_4—N12_4—C15_4—O17_4−177.7 (3)
O10_3—C4_3—N3_3—H3_32 (4)C15_4—O17_4—K1_1—O18_5−53.7 (5)
O11_3—K1_1—O17_4—C15_4−178.4 (3)C15_4—N12_4—C13_4—C5_4178.97 (10)
O11_3—K1_1—O18_5—H18B_5159.5 (3)C5_4—C13_4—N12_4—H12_4−5.2 (7)
O11_3—K1_1—O18_5—H18A_5−95 (4)O17_4—K1_1—O18_5—H18B_589 (3)
O11_3—K2_2—O17_4—C15_4177.5 (3)O17_4—K1_1—O18_5—H18A_5−166 (2)
O11_3—C6_3—N5_3—C4_3−178.4 (2)O17_4—C15_4—N14_4—H14_4−1.3 (3)
O11_3—C6_3—N5_3—H5_31 (4)O17_4—C15_4—N12_4—H12_46.4 (8)
O11_3—C6_3—N1_3—C2_3178.2 (3)
D—H···AD—HH···AD···AD—H···A
N3_3—H3_3···O9_31.02 (1)2.20 (1)2.6086 (7)102 (1)
N5_3—H5_3···O8_3viii1.02 (1)1.93 (1)2.9070 (7)162 (1)
N5_3—H5_3···O9_3viii1.02 (1)2.56 (1)3.3977 (6)140 (1)
N12_4—H12_4···O18_51.016 (5)1.984 (8)2.9628 (7)160.9 (4)
N12_4—H12_4···O18_5ii1.016 (5)2.659 (9)3.1515 (8)110 (2)
N14_4—H14_4···O16_4ix1.03 (1)2.23 (1)3.1553 (6)150 (2)
N14_4—H14_4···O16_4vii1.03 (1)2.23 (1)3.1553 (7)150 (2)
O18_5—H18B_5···O16_4xii0.96 (1)2.58 (1)3.3013 (8)133 (2)
O18_5—H18A_5···N1_3viii0.97 (1)1.93 (1)2.8927 (9)173 (1)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3_3—H3_3⋯O9_31.02 (1)2.20 (1)2.6086 (7)102 (1)
N5_3—H5_3⋯O8_3i 1.02 (1)1.93 (1)2.9070 (7)162 (1)
N5_3—H5_3⋯O9_3i 1.02 (1)2.56 (1)3.3977 (6)140 (1)
N12_4—H12_4⋯O18_51.016 (5)1.984 (8)2.9628 (7)160.9 (4)
N12_4—H12_4⋯O18_5ii 1.016 (5)2.659 (9)3.1515 (8)110 (2)
N14_4—H14_4⋯O16_4iii 1.03 (1)2.23 (1)3.1553 (6)150 (2)
N14_4—H14_4⋯O16_4iv 1.03 (1)2.23 (1)3.1553 (7)150 (2)
O18_5—H18B_5⋯O16_4v 0.96 (1)2.58 (1)3.3013 (8)133 (2)
O18_5—H18A_5⋯N1_3i 0.97 (1)1.93 (1)2.8927 (9)173 (1)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  7 in total

1.  Reticular synthesis and the design of new materials.

Authors:  Omar M Yaghi; Michael O'Keeffe; Nathan W Ockwig; Hee K Chae; Mohamed Eddaoudi; Jaheon Kim
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2.  Potassium N-(6-amino-3,4-dihydro-3-methyl-5-nitroso-4-oxopyrimidin-2-yl)-(S)-aspartate N-(6-amino-3,4-dihydro-3-methyl-5-nitroso-4-oxopyrimidin-2-yl)-(S)-aspartic acid 4.88-hydrate: a two-dimensional coordination polymer.

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Journal:  Acta Crystallogr C       Date:  2003-07-22       Impact factor: 1.172

3.  An improved experimental databank of transferable multipolar atom models--ELMAM2. Construction details and applications.

Authors:  Sławomir Domagała; Bertrand Fournier; Dorothee Liebschner; Benoît Guillot; Christian Jelsch
Journal:  Acta Crystallogr A       Date:  2012-03-29       Impact factor: 2.290

4.  Oximate-bridged trinuclear Dy-Cu-Dy complex behaving as a single-molecule magnet and its mechanistic investigation.

Authors:  Fumihito Mori; Tetsuya Nyui; Takayuki Ishida; Takashi Nogami; Kwang-Yong Choi; Hiroyuki Nojiri
Journal:  J Am Chem Soc       Date:  2006-02-08       Impact factor: 15.419

5.  Foundations of residual-density analysis.

Authors:  Kathrin Meindl; Julian Henn
Journal:  Acta Crystallogr A       Date:  2008-04-18       Impact factor: 2.290

6.  [Combined action of DNA-synthesis inhibitors on the reproduction of DNA viruses].

Authors:  S Pancheva
Journal:  Acta Microbiol Virol Immunol (Sofiia)       Date:  1977

7.  Microporous manganese formate: a simple metal-organic porous material with high framework stability and highly selective gas sorption properties.

Authors:  Danil N Dybtsev; Hyungphil Chun; Sun Hong Yoon; Dongwoo Kim; Kimoon Kim
Journal:  J Am Chem Soc       Date:  2004-01-14       Impact factor: 15.419

  7 in total

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