Literature DB >> 22514066

An improved experimental databank of transferable multipolar atom models--ELMAM2. Construction details and applications.

Sławomir Domagała1, Bertrand Fournier, Dorothee Liebschner, Benoît Guillot, Christian Jelsch.   

Abstract

ELMAM2 is a generalized and improved library of experimentally derived multipolar atom types. The previously published ELMAM database is restricted mostly to protein atoms. The current database is extended to common functional groups encountered in organic molecules and is based on optimized local axes systems taking into account the local pseudosymmetry of the molecular fragment. In this approach, the symmetry-restricted multipoles have zero populations, while others take generally significant values. The various applications of the database are described. The deformation electron densities, electrostatic potentials and interaction energies calculated for several tripeptides and aromatic molecules are calculated using ELMAM2 electron-density parameters and compared with the former ELMAM database and density functional theory calculations.
© 2012 International Union of Crystallography

Entities:  

Year:  2012        PMID: 22514066     DOI: 10.1107/S0108767312008197

Source DB:  PubMed          Journal:  Acta Crystallogr A        ISSN: 0108-7673            Impact factor:   2.290


  35 in total

1.  Transferable aspherical atom model refinement of protein and DNA structures against ultrahigh-resolution X-ray data.

Authors:  Maura Malinska; Zbigniew Dauter
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-05-25       Impact factor: 7.652

2.  DiSCaMB: a software library for aspherical atom model X-ray scattering factor calculations with CPUs and GPUs.

Authors:  Michał L Chodkiewicz; Szymon Migacz; Witold Rudnicki; Anna Makal; Jarosław A Kalinowski; Nigel W Moriarty; Ralf W Grosse-Kunstleve; Pavel V Afonine; Paul D Adams; Paulina Maria Dominiak
Journal:  J Appl Crystallogr       Date:  2018-02-01       Impact factor: 3.304

Review 3.  Electron Diffraction of 3D Molecular Crystals.

Authors:  Ambarneil Saha; Shervin S Nia; José A Rodríguez
Journal:  Chem Rev       Date:  2022-08-15       Impact factor: 72.087

Review 4.  The Relevance of Experimental Charge Density Analysis in Unraveling Noncovalent Interactions in Molecular Crystals.

Authors:  Sajesh P Thomas; Amol G Dikundwar; Sounak Sarkar; Mysore S Pavan; Rumpa Pal; Venkatesha R Hathwar; Tayur N Guru Row
Journal:  Molecules       Date:  2022-06-08       Impact factor: 4.927

5.  Dimeric structure of the N-terminal domain of PriB protein from Thermoanaerobacter tengcongensis solved ab initio.

Authors:  Dorothee Liebschner; Krzysztof Brzezinski; Miroslawa Dauter; Zbigniew Dauter; Marta Nowak; Józef Kur; Marcin Olszewski
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-11-09

6.  Topological Properties of Chemical Bonds from Static and Dynamic Electron Densities.

Authors:  Siriyara Jagannatha Prathapa; Jeanette Held; Sander van Smaalen
Journal:  Z Anorg Allg Chem       Date:  2013-07-23       Impact factor: 1.492

7.  Accurate crystal structures and chemical properties from NoSpherA2.

Authors:  Florian Kleemiss; Oleg V Dolomanov; Michael Bodensteiner; Norbert Peyerimhoff; Laura Midgley; Luc J Bourhis; Alessandro Genoni; Lorraine A Malaspina; Dylan Jayatilaka; John L Spencer; Fraser White; Bernhard Grundkötter-Stock; Simon Steinhauer; Dieter Lentz; Horst Puschmann; Simon Grabowsky
Journal:  Chem Sci       Date:  2020-11-09       Impact factor: 9.825

8.  Refinement of organic crystal structures with multipolar electron scattering factors.

Authors:  Barbara Gruza; Michał Leszek Chodkiewicz; Joanna Krzeszczakowska; Paulina Maria Dominiak
Journal:  Acta Crystallogr A Found Adv       Date:  2020-01-01       Impact factor: 2.290

9.  Weak Intermolecular Interactions in a Series of Bioactive Oxazoles.

Authors:  Anita M Grześkiewicz; Tomasz Stefański; Maciej Kubicki
Journal:  Molecules       Date:  2021-05-19       Impact factor: 4.411

10.  Charge density studies of multicentre two-electron bonding of an anion radical at non-ambient temperature and pressure.

Authors:  Valentina Milašinović; Krešimir Molčanov; Anna Krawczuk; Nikita E Bogdanov; Boris A Zakharov; Elena V Boldyreva; Christian Jelsch; Biserka Kojić-Prodić
Journal:  IUCrJ       Date:  2021-06-12       Impact factor: 4.769

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