Literature DB >> 24860287

Ethane-1,2-diaminium 2,2'-[tereph-thal-oyl-bis(aza-nedi-yl)]di-acetate tetrahydrate.

Niels-Patrick Pook1, Mimoza Gjikaj1, Arnold Adam1.   

Abstract

In the title salt hydrate, C2H10N2 (2+)·C12H10N2O6 (2-)·4H2O, each of the ions is located about a centre of inversion and the asymmetric unit is completed by two water molecules in general positons. In the crystal, the cations, anions and water mol-ecules are connected by O-H⋯O and N-H⋯O hydrogen bonding into a three-dimensional network.

Entities:  

Year:  2013        PMID: 24860287      PMCID: PMC4004431          DOI: 10.1107/S1600536813029632

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The starting material, 2,2′-(benzene-1,4-dicarboxamido)­diacetatic acid, was prepared by the method of Cleaver & Pratt (1955 ▶). For related organic structures, see: Armelin et al. (2001 ▶); Ray et al. (2006 ▶). For crystal strucutres of d-block elements with 2,2′-(terephthaloylbis(aza­nedi­yl))di­acetate and similar ligands, see: Duan et al. (2010 ▶); Kostakis et al. (2005 ▶, 2011 ▶); Wisser et al. (2008 ▶); Zhang & You (2005) ▶; Zhang et al. (2006 ▶).

Experimental

Crystal data

C2H10N2 2+·C12H10N2O6 2−·4H2O M = 412.40 Monoclinic, a = 7.3710 (11) Å b = 9.0675 (11) Å c = 14.704 (2) Å β = 105.041 (11)° V = 949.1 (2) Å3 Z = 2 Mo Kα radiation μ = 0.12 mm−1 T = 223 K 0.28 × 0.25 × 0.22 mm

Data collection

Stoe IPDS 2 diffractometer 9883 measured reflections 1859 independent reflections 1633 reflections with I > 2σ(I) R int = 0.099

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.096 S = 1.09 1859 reflections 183 parameters All H-atom parameters refined Δρmax = 0.27 e Å−3 Δρmin = −0.27 e Å−3 Data collection: X-AREA (Stoe, 2008 ▶); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia 2012 ▶); software used to prepare material for publication: SHELXL97, PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536813029632/nc2319sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813029632/nc2319Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813029632/nc2319Isup3.cdx Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813029632/nc2319Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C2H10N22+·C12H10N2O62·4H2OF(000) = 440
Mr = 412.40Dx = 1.443 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1859 reflections
a = 7.3710 (11) Åθ = 1.0–26.0°
b = 9.0675 (11) ŵ = 0.12 mm1
c = 14.704 (2) ÅT = 223 K
β = 105.041 (11)°Block, colorless
V = 949.1 (2) Å30.28 × 0.25 × 0.22 mm
Z = 2
Stoe IPDS 2 diffractometer1633 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.099
Graphite monochromatorθmax = 26.0°, θmin = 2.7°
ω–scansh = −9→9
9883 measured reflectionsk = −11→11
1859 independent reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.096All H-atom parameters refined
S = 1.09w = 1/[σ2(Fo2) + (0.0383P)2 + 0.2529P] where P = (Fo2 + 2Fc2)/3
1859 reflections(Δ/σ)max < 0.001
183 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = −0.27 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.49836 (13)0.43561 (11)0.11941 (7)0.0248 (2)
O20.67537 (15)0.79044 (11)0.17064 (7)0.0293 (3)
O30.87997 (14)0.70796 (12)0.30002 (8)0.0307 (3)
O41.16417 (16)0.83739 (12)0.24811 (9)0.0304 (3)
H4A1.250 (3)0.875 (3)0.2948 (17)0.052 (6)*
H4B1.067 (3)0.806 (3)0.2678 (16)0.050 (6)*
O50.57247 (18)0.30272 (13)0.50636 (9)0.0387 (3)
H5A0.505 (3)0.294 (3)0.4449 (19)0.058 (7)*
H5B0.539 (4)0.227 (3)0.534 (2)0.073 (8)*
N10.39210 (16)0.60948 (13)0.20250 (8)0.0216 (3)
H10.302 (3)0.670 (2)0.2048 (14)0.037 (5)*
N21.13211 (18)0.50461 (14)0.40607 (9)0.0256 (3)
H2A1.234 (3)0.561 (2)0.4374 (14)0.035 (5)*
H2B1.039 (3)0.560 (2)0.3615 (15)0.041 (5)*
H2C1.183 (3)0.434 (3)0.3741 (16)0.053 (6)*
C10.17640 (18)0.50869 (14)0.06420 (9)0.0192 (3)
C20.01507 (19)0.54693 (15)0.09178 (10)0.0218 (3)
H20.023 (2)0.5766 (19)0.1573 (13)0.028 (4)*
C30.16018 (19)0.46137 (15)−0.02754 (10)0.0220 (3)
H30.268 (2)0.4371 (18)−0.0461 (12)0.021 (4)*
C40.36832 (18)0.51552 (14)0.13090 (9)0.0194 (3)
C50.56927 (18)0.62239 (15)0.27321 (10)0.0215 (3)
H510.625 (2)0.527 (2)0.2943 (12)0.025 (4)*
H520.544 (3)0.673 (2)0.3279 (14)0.033 (5)*
C60.71953 (19)0.71403 (14)0.24383 (10)0.0205 (3)
C71.0404 (2)0.43916 (16)0.47572 (11)0.0275 (3)
H7A1.135 (3)0.384 (2)0.5210 (14)0.036 (5)*
H7B0.937 (3)0.375 (2)0.4412 (13)0.033 (5)*
U11U22U33U12U13U23
O10.0196 (5)0.0265 (5)0.0275 (5)0.0040 (4)0.0048 (4)−0.0023 (4)
O20.0294 (6)0.0305 (5)0.0258 (6)−0.0051 (4)0.0034 (4)0.0053 (4)
O30.0208 (5)0.0308 (6)0.0363 (6)−0.0048 (4)−0.0001 (4)0.0053 (4)
O40.0237 (6)0.0322 (6)0.0349 (6)−0.0038 (4)0.0070 (5)−0.0053 (5)
O50.0466 (7)0.0325 (6)0.0307 (7)−0.0133 (5)−0.0010 (5)0.0009 (5)
N10.0157 (5)0.0219 (6)0.0266 (6)0.0004 (4)0.0041 (5)−0.0026 (4)
N20.0255 (6)0.0263 (6)0.0237 (6)0.0008 (5)0.0040 (5)−0.0018 (5)
C10.0180 (6)0.0154 (6)0.0237 (7)−0.0017 (5)0.0047 (5)0.0024 (5)
C20.0204 (7)0.0224 (7)0.0230 (7)−0.0017 (5)0.0065 (5)−0.0016 (5)
C30.0170 (6)0.0226 (7)0.0281 (7)−0.0007 (5)0.0087 (5)−0.0016 (5)
C40.0189 (6)0.0177 (6)0.0227 (7)−0.0011 (5)0.0070 (5)0.0033 (5)
C50.0201 (7)0.0229 (7)0.0204 (7)−0.0011 (5)0.0033 (5)−0.0010 (6)
C60.0202 (7)0.0181 (6)0.0228 (7)−0.0006 (5)0.0050 (5)−0.0038 (5)
C70.0358 (8)0.0206 (7)0.0260 (8)0.0025 (6)0.0076 (6)−0.0010 (6)
O1—C41.2476 (16)C1—C31.391 (2)
O2—C61.2500 (18)C1—C21.3961 (19)
O3—C61.2558 (17)C1—C41.4990 (18)
O4—H4A0.87 (3)C2—C3i1.390 (2)
O4—H4B0.89 (3)C2—H20.987 (19)
O5—H5A0.92 (3)C3—C2i1.390 (2)
O5—H5B0.86 (3)C3—H30.931 (17)
N1—C41.3301 (18)C5—C61.5337 (18)
N1—C51.4476 (17)C5—H510.977 (18)
N1—H10.87 (2)C5—H520.98 (2)
N2—C71.489 (2)C6—O31.2558 (17)
N2—H2A0.93 (2)C7—C7ii1.517 (3)
N2—H2B0.96 (2)C7—H7A0.97 (2)
N2—H2C0.93 (2)C7—H7B0.98 (2)
H4A—O4—H4B110 (2)O1—C4—N1122.09 (12)
H5A—O5—H5B104 (2)O1—C4—C1121.01 (12)
C4—N1—C5121.96 (12)N1—C4—C1116.90 (11)
C4—N1—H1119.3 (13)N1—C5—C6115.11 (12)
C5—N1—H1118.6 (13)N1—C5—H51112.5 (10)
C7—N2—H2A109.4 (12)C6—C5—H51107.3 (10)
C7—N2—H2B108.1 (12)N1—C5—H52107.5 (11)
H2A—N2—H2B113.2 (17)C6—C5—H52106.3 (11)
C7—N2—H2C112.9 (14)H51—C5—H52107.8 (15)
H2A—N2—H2C104.4 (18)O2—C6—O3125.53 (13)
H2B—N2—H2C108.9 (18)O2—C6—O3125.53 (13)
C3—C1—C2119.54 (13)O2—C6—C5119.81 (12)
C3—C1—C4118.45 (12)O3—C6—C5114.62 (12)
C2—C1—C4122.01 (13)O3—C6—C5114.62 (12)
C3i—C2—C1120.03 (14)N2—C7—C7ii109.72 (15)
C3i—C2—H2119.1 (10)N2—C7—H7A107.8 (12)
C1—C2—H2120.9 (10)C7ii—C7—H7A110.7 (12)
C2i—C3—C1120.43 (13)N2—C7—H7B107.9 (11)
C2i—C3—H3120.1 (10)C7ii—C7—H7B109.0 (11)
C1—C3—H3119.5 (10)H7A—C7—H7B111.6 (16)
C3—C1—C2—C3i−0.5 (2)C3—C1—C4—N1154.93 (12)
C4—C1—C2—C3i−179.87 (12)C2—C1—C4—N1−25.66 (18)
C2—C1—C3—C2i0.5 (2)C4—N1—C5—C679.20 (16)
C4—C1—C3—C2i179.89 (12)O3—O3—C6—O20.00 (17)
C5—N1—C4—O1−1.6 (2)O3—O3—C6—C50.00 (13)
C5—N1—C4—C1177.93 (11)N1—C5—C6—O211.70 (18)
C3—C1—C4—O1−25.48 (18)N1—C5—C6—O3−170.64 (12)
C2—C1—C4—O1153.92 (13)N1—C5—C6—O3−170.64 (12)
D—H···AD—HH···AD···AD—H···A
O4—H4B···O30.89 (3)1.80 (3)2.6792 (16)169 (2)
N2—H2B···O30.96 (2)1.85 (2)2.7896 (17)164.3 (18)
O4—H4A···O1iii0.87 (3)2.03 (3)2.8741 (16)162 (2)
O5—H5A···O2iv0.92 (3)1.87 (3)2.7669 (17)168 (2)
O5—H5B···O1v0.86 (3)2.01 (3)2.8641 (17)169 (3)
N1—H1···O4vi0.87 (2)2.02 (2)2.8509 (17)159.8 (18)
N2—H2A···O5ii0.93 (2)1.91 (2)2.8278 (18)172.6 (18)
N2—H2C···O2vii0.93 (2)1.89 (2)2.8086 (17)169 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O4—H4B⋯O30.89 (3)1.80 (3)2.6792 (16)169 (2)
N2—H2B⋯O30.96 (2)1.85 (2)2.7896 (17)164.3 (18)
O4—H4A⋯O1i 0.87 (3)2.03 (3)2.8741 (16)162 (2)
O5—H5A⋯O2ii 0.92 (3)1.87 (3)2.7669 (17)168 (2)
O5—H5B⋯O1iii 0.86 (3)2.01 (3)2.8641 (17)169 (3)
N1—H1⋯O4iv 0.87 (2)2.02 (2)2.8509 (17)159.8 (18)
N2—H2A⋯O5v 0.93 (2)1.91 (2)2.8278 (18)172.6 (18)
N2—H2C⋯O2vi 0.93 (2)1.89 (2)2.8086 (17)169 (2)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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4.  Structure validation in chemical crystallography.

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1.  Crystal structure of bis-[tris-(1,10-phenanthroline-κ(2) N,N')cobalt(II)] tetra-nitrate N,N'-(1,4-phenyl-enedicarbon-yl)diglycine solvate octa-hydrate.

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