Literature DB >> 24850206

The DNA bank network: the start from a german initiative.

Birgit Gemeinholzer1, Gabriele Dröge, Holger Zetzsche, Gerhard Haszprunar, Hans-Peter Klenk, Anton Güntsch, Walter G Berendsohn, Johann-Wolfgang Wägele.   

Abstract

The explicit aim of the DNA Bank Network is to close the divide between biological specimen collections and molecular sequence databases. It provides a technically optimized DNA and tissue collection service facility in the interest of all biological research, with access to well-documented DNA-containing samples and voucher specimens as well as to corresponding molecular data stored in public sequence databases. The Network enables scientists to (i) query and order DNA samples of organisms collected from natural habitats via a shared Web portal, (ii) store DNA samples for reference under optimal conditions after project completion or data publication, (iii) obtain DNA material to conduct new studies or to extend and complement previous investigations, and (iv) support good scientific practice as the deposition of DNA samples and related specimens facilitates the verification of published results.

Year:  2011        PMID: 24850206     DOI: 10.1089/bio.2010.0029

Source DB:  PubMed          Journal:  Biopreserv Biobank        ISSN: 1947-5543            Impact factor:   2.300


  113 in total

1.  Genome sequence of Phaeobacter caeruleus type strain (DSM 24564(T)), a surface-associated member of the marine Roseobacter clade.

Authors:  Paul G Beyersmann; Olga Chertkov; Jörn Petersen; Anne Fiebig; Amy Chen; Amrita Pati; Natalia Ivanova; Alla Lapidus; Lynne A Goodwin; Patrick Chain; John C Detter; Manfred Rohde; Sabine Gronow; Nikos C Kyrpides; Tanja Woyke; Meinhard Simon; Markus Göker; Hans-Peter Klenk; Thorsten Brinkhoff
Journal:  Stand Genomic Sci       Date:  2013-07-30

2.  Complete genome sequence of the facultatively anaerobic, appendaged bacterium Muricauda ruestringensis type strain (B1(T)).

Authors:  Marcel Huntemann; Hazuki Teshima; Alla Lapidus; Matt Nolan; Susan Lucas; Nancy Hammon; Shweta Deshpande; Jan-Fang Cheng; Roxanne Tapia; Lynne A Goodwin; Sam Pitluck; Konstantinos Liolios; Ioanna Pagani; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Chongle Pan; Evelyne-Marie Brambilla; Manfred Rohde; Stefan Spring; Markus Göker; John C Detter; James Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Nikos C Kyrpides; Hans-Peter Klenk; Tanja Woyke
Journal:  Stand Genomic Sci       Date:  2012-05-04

3.  Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15(T)).

Authors:  Hans-Peter Klenk; Megan Lu; Susan Lucas; Alla Lapidus; Alex Copeland; Sam Pitluck; Lynne A Goodwin; Cliff Han; Roxanne Tapia; Evelyne-Marie Brambilla; Gabriele Pötter; Miriam Land; Natalia Ivanova; Manfred Rohde; Markus Göker; John C Detter; Wen-Jun Li; Nikos C Kyrpides; Tanja Woyke
Journal:  Stand Genomic Sci       Date:  2012-05-15

4.  Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4(T)).

Authors:  Alex Copeland; Xiaojing Zhang; Monica Misra; Alla Lapidus; Matt Nolan; Susan Lucas; Shweta Deshpande; Jan-Fang Cheng; Roxanne Tapia; Lynne A Goodwin; Sam Pitluck; Konstantinos Liolios; Ioanna Pagani; Natalia Ivanova; Natalia Mikhailova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Chongle Pan; Cynthia D Jeffries; John C Detter; Evelyne-Marie Brambilla; Manfred Rohde; Olivier D Ngatchou Djao; Markus Göker; Johannes Sikorski; Brian J Tindall; Tanja Woyke; James Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Nikos C Kyrpides; Hans-Peter Klenk; Konstantinos Mavromatis
Journal:  Stand Genomic Sci       Date:  2012-05-04

5.  Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282(T)).

Authors:  Thomas Riedel; Brittany Held; Matt Nolan; Susan Lucas; Alla Lapidus; Hope Tice; Tijana Glavina Del Rio; Jan-Fang Cheng; Cliff Han; Roxanne Tapia; Lynne A Goodwin; Sam Pitluck; Konstantinos Liolios; Konstantinos Mavromatis; Ioanna Pagani; Natalia Ivanova; Natalia Mikhailova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Manfred Rohde; Brian J Tindall; John C Detter; Markus Göker; James Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Nikos C Kyrpides; Hans-Peter Klenk; Tanja Woyke
Journal:  Stand Genomic Sci       Date:  2012-10-10

6.  Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8(T)).

Authors:  Iain Anderson; Christine Munk; Alla Lapidus; Matt Nolan; Susan Lucas; Hope Tice; Tijana Glavina Del Rio; Jan-Fang Cheng; Cliff Han; Roxanne Tapia; Lynne Goodwin; Sam Pitluck; Konstantinos Liolios; Konstantinos Mavromatis; Ioanna Pagani; Natalia Mikhailova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Manfred Rohde; Brian J Tindall; Markus Göker; John C Detter; Tanja Woyke; James Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Nikos C Kyrpides; Hans-Peter Klenk; Natalia Ivanova
Journal:  Stand Genomic Sci       Date:  2012-12-04

7.  Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DL(T)).

Authors:  Stefan Spring; Michael Visser; Megan Lu; Alex Copeland; Alla Lapidus; Susan Lucas; Jan-Fang Cheng; Cliff Han; Roxanne Tapia; Lynne A Goodwin; Sam Pitluck; Natalia Ivanova; Miriam Land; Loren Hauser; Frank Larimer; Manfred Rohde; Markus Göker; John C Detter; Nikos C Kyrpides; Tanja Woyke; Peter J Schaap; Caroline M Plugge; Gerard Muyzer; Jan Kuever; Inês A C Pereira; Sofiya N Parshina; Rizlan Bernier-Latmani; Alfons J M Stams; Hans-Peter Klenk
Journal:  Stand Genomic Sci       Date:  2012-12-11

8.  Complete genome sequence of the moderately thermophilic mineral-sulfide-oxidizing firmicute Sulfobacillus acidophilus type strain (NAL(T)).

Authors:  Iain Anderson; Olga Chertkov; Amy Chen; Elizabeth Saunders; Alla Lapidus; Matt Nolan; Susan Lucas; Nancy Hammon; Shweta Deshpande; Jan-Fang Cheng; Cliff Han; Roxanne Tapia; Lynne A Goodwin; Sam Pitluck; Konstantinos Liolios; Ioanna Pagani; Natalia Ivanova; Natalia Mikhailova; Amrita Pati; Krishna Palaniappan; Miriam Land; Chongle Pan; Manfred Rohde; Rüdiger Pukall; Markus Göker; John C Detter; Tanja Woyke; James Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Nikos C Kyrpides; Hans-Peter Klenk; Konstantinos Mavromatis
Journal:  Stand Genomic Sci       Date:  2012-07-20

9.  Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437(T)).

Authors:  Konstantinos Mavromatis; Erko Stackebrandt; Christine Munk; Alla Lapidus; Matt Nolan; Susan Lucas; Nancy Hammon; Shweta Deshpande; Jan-Fang Cheng; Roxanne Tapia; Lynne A Goodwin; Sam Pitluck; Konstantinos Liolios; Ioanna Pagani; Natalia Ivanova; Natalia Mikhailova; Marcel Huntemann; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Manfred Rohde; Sabine Gronow; Markus Göker; John C Detter; James Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Nikos C Kyrpides; Hans-Peter Klenk; Tanja Woyke
Journal:  Stand Genomic Sci       Date:  2013-04-15

10.  Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1(T)), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta, and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema.

Authors:  Birte Abt; Markus Göker; Carmen Scheuner; Cliff Han; Megan Lu; Monica Misra; Alla Lapidus; Matt Nolan; Susan Lucas; Nancy Hammon; Shweta Deshpande; Jan-Fang Cheng; Roxanne Tapia; Lynne A Goodwin; Sam Pitluck; Konstantinos Liolios; Ioanna Pagani; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Marcel Huntemann; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Cynthia D Jeffries; Manfred Rohde; Stefan Spring; Sabine Gronow; John C Detter; James Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Nikos C Kyrpides; Tanja Woyke; Hans-Peter Klenk
Journal:  Stand Genomic Sci       Date:  2013-04-15
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