A chitinase was purified from Vitis vinifera Manzoni Bianco grape juice and characterized. On the basis of proteomic analysis of tryptic peptides, a significant match identified the enzyme as a type IV grape chitinase previously found in juices of other V. vinifera varieties. The optimal pH and temperature for activity toward colloidal chitin were found to be 6 and 30 °C, respectively. The enzyme was found to hydrolyze chitin and oligomers of N-acetylglucosamine, generating N,N'-diacetylchitobiose and N-acetylglucosamine as products, but was inactive toward N,N'-diacetylchitobiose. The enzyme exhibited both endo- and exochitinase activities. Because yeast contains a small amount of chitin in the cell wall, the possibility of growth inhibition was tested. At a concentration and pH expected in ripe grapes, no inhibition of wine yeast growth by the chitinase was observed.
A chitinase was purified from Vitis vinifera Manzoni Bianco grape juice and characterized. On the basis of proteomic analysis of tryptic peptides, a significant match identified the enzyme as a type IV grape chitinase previously found in juices of other V. vinifera varieties. The optimal pH and temperature for activity toward colloidal chitin were found to be 6 and 30 °C, respectively. The enzyme was found to hydrolyze chitin and oligomers of N-acetylglucosamine, generating N,N'-diacetylchitobiose and N-acetylglucosamine as products, but was inactive toward N,N'-diacetylchitobiose. The enzyme exhibited both endo- and exochitinase activities. Because yeast contains a small amount of chitin in the cell wall, the possibility of growth inhibition was tested. At a concentration and pH expected in ripe grapes, no inhibition of wine yeast growth by the chitinase was observed.
Chitinases (EC 3.2.1.14) are glycosyl
hydrolases that catalyze
the degradation of chitin, a β-1,4-linked polymer of N-acetylglucosamine (GlcNAc) found in fungal cell walls
among other natural sources.[1] Although
higher plants lack chitin, they harbor chitinase genes and express
them in response to pathogens or developmental cues in susceptible
tissues.[2,3] In Vitis vinifera, type IV chitinase activity has been reported to increase dramatically
in berries during ripening, presumably to provide protection from
potential fungal attack.[4] Type IV chitinases
have been detected in the juice of a number of varieties of V. vinifera species[4−7] and in wines made thereof.[7−11] Chitinase concentration in bottled white wines has
also been found to correlate with the formation of heat-induced turbidity,
a recognized quality defect.[12] Chitinase
activity was reported to decrease significantly from initial levels
detected in Pinot noir berries through the various stages of sparkling
wine production to undetectable levels in the final wine.[13]Chitinases have been classified into two
major categories: endochitinases
and exochitinases.[14] However, the current
nomenclature for chitinolytic enzymes is confusing, due in part to
the fact that the former classification scheme has not been abandoned.[15,16] The former scheme distinguished the exochitinases (EC 3.2.1.29),
which catalyze progressive release of dimeric chitobiose residues
from the nonreducing end, from the N-acetyl-β-d-glucosaminidases (EC 3.2.1.30), which release monomeric GlcNAc
residues from chitin oligomers.[14] Currently,
the International Union of Biochemistry and Molecular Biology (IUBMB)
recognizes a single β-N-acetylhexosaminidase
class of enzyme, EC 3.2.1.52, that includes the former EC 3.2.1.29
and EC 3.2.1.30 enzyme classes. Furthermore, some authors have described
the enzymes that release small oligomers (including dimers) from the
reducing end as endochitinases (EC 3.2.1.14), differentiating them
from even the strictly endotype enzymes.[17] In the present paper, we use the nomenclature proposed by Harman
et al., in which the difference between endo- and exochitinases is
substrate specificity: endochitinases require at least tetrameric
GlcNAc, whereas the minimum substrate for an exochitinase is the GlcNAc
trimer. In addition, we refer to the enzyme that catalyzes the release
of dimers as chitobiosidase.[18]Although
a number of studies have characterized family 19 chitinases,
which include the type IV enzyme,[19,20] to our knowledge,
the grape type IV chitinase has been subjected to limited biochemical
analysis.[21,22] Here, we determined enzyme activity and
substrate specificity and asked whether chitinase activity likely
to be present in ripe grapes has the potential to inhibit yeast growth
during wine fermentation.
Materials and Methods
Purification
of Grape Chitinase
Initially, 6 L of grape
juice from V. vinifera Manzoni Bianco was treated
overnight at 4 °C with 4 g/L of polyvinylpolypyrrolidone (PVPP)
(Fluka), 2 g/L activated charcoal (Sigma), and 3 g/L of pectolytic
enzymes (Pectazina DC, Dal Cin). The juice was decanted, filtered
through a GF/A filter (Whatman), adjusted to pH 3.0 with HCl, and
then filtered through a 0.2 μm cellulose acetate filter (Sartorius).
Chitinase was purified from the filtered juice essentially as described.[5] The only modification was the substitution of
the MacroPrep High S resin with an S-Sepharose resin (220 mL). Fractions
containing a single band at 31 kDa (corresponding to the molecular
weight of grape chitinase) were pooled, dialyzed against water (3500
Da cutoff dialysis membrane), and freeze-dried. The purity of the
protein was checked by HPLC as described.[6]
Chitinase Identification by LC-MS/MS Analysis of Tryptic Peptides
The freeze-dried purified 31 kDa fraction was processed for in-solution
trypsin (Promega Trypsin Gold) digestion in the presence of a protease
enhancer (Promega ProteaseMAX Surfactant) according to the manufacturer’s
protocol. LC-MS/MS analysis was conducted on an LTQ-FT MS (Thermo
Fisher Scientific, San Jose, CA, USA) instrument coupled to a nanoAcquity
UPLC system (Waters Corp., Milford, MA, USA). A binary solvent system
consisting of solvent A, water with 0.1% formic acid, and solvent
B, acetonitrile with 0.1% formic acid, was used for the analyses.
Tryptic peptides (2 μL) were loaded onto a peptide trapping
column (Cap Trap, Michrom) and separated using a C18 column (Agilent
Zorbax 300SB-C18, 250 × 0.3 mm, 5 μm). Peptides were trapped
and washed with 3% solvent B for 3 min at a flow rate of 5 μL/min.
Peptide separation was achieved using a linear gradient from 10 to
30% B at a flow rate of 4 μL/min over 102 min. The LTQ-FT mass
spectrometer was operated using data-dependent MS/MS acquisition with
an MS precursor ion scan, performed in the ICR cell, from m/z 350 to 2000 with the resolving power
set to 100,000 at m/z 400, and MS/MS
scans performed by the linear ion trap on the five most abundant doubly
or triply charged precursor ions detected in the MS scan.Thermo
RAW data files were processed with Proteome Discoverer v1.4.0. Mascot
software (v2.3) and were used to search against the V. vinifera database downloaded from UniprotKB on July 8, 2013 (http://www.uniprot.org/), which included common processing contaminants. The following parameters
were used to search the database: the digestion enzyme was set to
Trypsin/P, and two missed cleavage sites were allowed. The precursor
ion mass tolerance was set to 10 ppm, whereas a fragment ion tolerance
of 0.8 Da was used. Dynamic modifications that were considered included
carbamidomethyl (+57.02 Da) for cysteine, oxidation (+15.99 Da) for
methionine, and deamidination (+0.98 Da) of asparagine and glutamine.
Scaffold_3.3.1 (Proteome Software, Portland, OR, USA) was used for
search data compilation and data evaluation with an embedded X!Tandem
database searching algorithm. Peptide identifications were accepted
if they could be established at >90.0% probability. Peptide Probabilities
from X! Tandem were assigned by the Peptide Prophet algorithm[23] with Scaffold delta-mass correction. Peptide
Probabilities from Mascot were assigned by the Scaffold Local FDR
algorithm. Protein identifications were accepted if they could be
established at >90.0% probability and contained at least two identified
peptides. Protein probabilities were assigned by the Protein Prophet
algorithm.[24] Proteins that contained similar
peptides and could not be differentiated on the basis of MS/MS analysis
alone were grouped to satisfy the principles of parsimony. Identified
MS/MS spectra were manually validated, and ion assignments were made
according to the spectral output of the Scaffold program.
Purification
of Chitin Oligomers
Two grams of crab
shell chitin (Fluka 22780) were hydrolyzed by suspension in 32 mL
of 12 M HCl initially for 10 min at room temperature followed by an
additional 110 min at 40 °C. The solution was neutralized on
ice by slow addition of 32 mL of 50% NaOH. Insoluble matter was removed
by centrifugation, and the clear supernatant was adjusted to pH 7
and ultrafiltered on an apparatus equipped with a 500 Da cutoff membrane
(Amicon) to remove excess salt and to concentrate the oligomers. When
a volume of 3 mL was reached, 1.5 mL was loaded onto a Bio-Gel P2
(Bio-Rad Laboratories) column (100 × 1.5 cm) and eluted at a
rate of 0.25 mL/min using distilled water. One milliliter fractions
were collected, freeze-dried, and resuspended in 20 μL of water.
TLC Analysis
TLC analysis was performed using silica
TLC plates and a butanol/acetic acid/water (2:1:1) solvent[25] to determine oligomer purity in the Biogel P2
fractions and subsequently to determine the mechanism of chitinase
action. Two microliters of the Bio-Gel P2 fractions was analyzed,
and fractions with the same profile were pooled and freeze-dried. N-Acetylglucosamine (GlcNAc) and (GlcNAc)2–3 standards (Sigma-Aldrich, St. Louis, MO, USA) were used for reference.
Higher oligomers, (GlcNAc)4–6, that were not commercially
available were identified on the basis of mobility relative to the
monomer and (GlcNAc)2–3 oligomers.Amino sugars
were detected by staining with a solution of aniline/diphenylamine
(4 mL of aniline, 4 g of diphenylamine, 200 mL of acetone, 30 mL of
85% phosphoric acid), followed by incubation for 3 min at 180 °C.
Chitinase Activity
Colloidal chitin used as substrate
was prepared essentially as described by Sheng et al. starting with
crab shell chitin.[26] For the determination
of pH and temperature optima, chitinase activity was measured using
an assay that specifically detected GlcNAc by reaction with p-dimethylaminobenzaldehyde (DMAB).[27] One unit of activity was defined as the amount of enzyme that catalyzed
the release of 1 nmol of GlcNAc per minute at 37 °C and pH 5.5.
A different chitinase assay was used to quantify activity when the
inhibition of yeast growth was assessed. Specifically, chitinase added
to yeast cultures was assayed prior to the addition by determining
a linear increase in soluble reducing sugar over 1 h[28] using a commercial kit (Thermo Scientific Pierce Micro
BCA Protein Assay Kit 23235) and GlcNAc as standard. Although this
Cu-based assay kit is designated for protein quantification, the same
reaction measures reducing sugar as well.[29] For this assay, one unit of chitinase activity was defined as that
which liberated 1 mg of GlcNAc equivalents per hour at 25 °C.
Activity versus pH Determination
Two buffers were prepared
at 50 mM strength: a citric acid–phosphateMcIlvaine buffer,
covering the pH range from 2.5 to 8, and a glycine buffer, covering
the pH range from 8.5 to 10.5. For each pH tested, 800 μL of
colloidal chitin was washed three times with 2 volumes of the corresponding
buffer and resuspended in a final volume of 1600 μL (0.5% w/v
final chitin concentration). Half of the solution volume was kept
as a control, whereas chitinase was added to the other 800 μL
of substrate to a final concentration of 50 μg/mL. After 2 h
at 37 °C, both the sample and the control were centrifuged (12000g, 5 min), and 250 μL of clear supernatant was used
to quantify GlcNAc. The difference between the absorbance of the sample
and that of the control was used to determine the enzyme activity.
Activity versus Temperature Determination
Chitinase
activity was determined as a function of temperature in 50 mM sodium
acetate buffer, pH 6. Colloidal chitin (800 μL) was washed three
times with 2 volumes of buffer and resuspended in a final volume of
1600 μL (0.5% w/v final chitin concentration). After a 30 min
equilibration of substrate at each chosen temperature, 50 μg/mL
of enzyme was added to initiate reactions. After a 1 h incubation,
samples were centrifuged (12000g for 5 min) and GlcNAc
concentrations were determined in 250 μL of clear supernatant.
Determination of Substrate Specificity
Activity against N,N′-diacetylchitobiose and the
oligomers (GlcNAc)3–6 was assessed under the following
conditions. Two microliters of individual substrates at 10 mg/mL in
water was diluted into a final volume of 50 μL of 50 mM ammonium
acetate, pH 5.5, to which 1 μL of enzyme (10 mg/mL) was added.
Two control reactions were run per substrate: one with substrate but
without enzyme and the other with substrate and heat-inactivated enzyme
(100 °C for 5 min). After a 1 h incubation at 37 °C, samples
were freeze-dried, during which the ammonium acetate was evaporated.
The residues were then resuspended in 3 μL of water and loaded
onto TLC plates.
Yeast Strains, Growth Media
Four
strains of Saccharomyces cerevisiae were used; laboratory strain
S288c (MATα SUC2 gal2 mal mel flo1
flo8–1 hap1 ho bio1 bio6); a brewing strain, 2007-Pilsen
Lager (Wyeast Laboratories); and the wine strains EC1118 and RC212
(Lallemand). Strains were grown in yeastnitrogen base (YNB) without
amino acids, pH 5.2 (Difco), containing 2% glucose (YNB + glu) or
in YNB containing 2% glucose adjusted to pH 3.5 by the addition of
26.6 mM tartaric acid (YNB + glu + tartrate, pH 3.5).
Yeast Growth
Assay
Growth inhibition was assessed as
a reduction in cell yield (A600) in treated
versus control cells. Treated cells were grown in the presence of
grape chitinase, whereas control cells were grown in the presence
of the same amount of boiled grape chitinase. Cells were grown overnight
in YNB + glu or YNB + glu + tartrate, pH 3.5, washed twice in sterile
distilled water, and then diluted to an initial concentration of 103 cells/mL in 1 mL aliquots of YNB + glu or YNB + glu + tartrate,
pH 3.5, respectively, containing 50 μg of chitinase or boiled
chitinase (control). In 100 mM sodium phosphate at pH 6.0, 5.2, and
3.5, 50 μg of grape chitinase was found to contain 0.0237 ±
9.7 × 10–4, 0.0288 ± 1.3 × 10–3, and 0.0249 ± 1.8 × 10–3 units of activity (n = 2), respectively. Initial
cell concentrations were determined by use of a hemacytometer. Cells
were incubated in triplicate for 48 or 72 h at 30 °C and 200
rpm in 1.5 mL screw-capped polypropylene tubes, after which A600 values were measured. Growth inhibition
was expressed as the ratio [A600 (treated
cells)/A600 (control cells)] × 100.
The significance of differences was assessed using Student’s
two-sided, two-tailed t test (p <
0.05).
Results and Discussion
Chitinase Purification
and Identification
After the
two purification steps, 130 mg of chitinase (97% purity by HPLC, calculated
as peak area on the chromatogram) was obtained from 6 L of Manzoni
Bianco grape juice (Figure 1), comparable to
yields obtained by Van Sluyter et al., 45 and 10 mg/L for Semillon
and Sauvignon blanc juices, respectively.[5]
Figure 1
HPLC
chromatogram of pooled fractions containing the purified 31
kDa protein (elution peak at 21 min).
HPLC
chromatogram of pooled fractions containing the purified 31
kDa protein (elution peak at 21 min).The purified 31 kDa protein was identified as a type IV chitinase
on the basis of significant matches with three different tryptic peptides
(Table 1) shared by two enzymes designated Q7XAU6_VITVI (UniProtKB) based on the deduced amino acid sequence of cDNA VvChi4D
(EMBL AAQ10093.1) and the V. viniferachitinase designated O24530 (UniProtKB),
the sequence of which was deduced from cDNA VvChi4A.[4] Q7XAU6_VITVI was previously detected in juice from Semillon
and Sauvignon blanc grape varieties.[5,30,31] It is possible that the two proteins are allelic
variants encoded by the same gene (Figure 2a). Tandem mass spectra of ion fragments derived from the three identified
peptides are listed in Figure 2b–d.
Although protein and peptide identification probabilities were set
to >90%, the peptides listed in this figure have peptide identification
probabilities of 100%.
Table 1
Identified
Peptides with Matches in V. vinifera Chitinases Q7XAU6_VITVI
and O24530
protein
sequence
Mascot ion scorea
m/z
Q7XAU6_VITVI
AAFLSALNSYSGFGNDGSTDANKR
104.89
821.7239
TALWFWMNNVHSVIGQGFGATIR
82.87
1303.17
O24530
AINGAVECNGGNTAAVNAR
105.66
929.9467
Mascot ion score = [−10 log(P)], where P is the calculated probability
that the observed MS/MS match between the experimental data and the
database sequence is random.
Figure 2
Sequence
alignment of identified V. vinifera class
IV chitinases and mass spectra for fragment ions derived from the
three identified peptides. (a) Aligned sequences of UniProtKB Q7XAU6_VITVI (Q7XA-) and UniProtKB O24530 (0245-) with the identified peptides
indicated in color and in bold font. Because the second and third
peptides are contiguous, the third is in italicized bold font. Mass
spectra for the major fragment ions (red, b ions; blue, y ions) matched
the theoretically predicted fragmentation of (b) peptide AAFLSALNSYSGFGNDGSTDANK,
(c) peptide TALWFWMNNVHSVIGQGFGATIR,
and (d) peptide AINGAVECNGGNTAAVNAR.
Sequence
alignment of identified V. vinifera class
IV chitinases and mass spectra for fragment ions derived from the
three identified peptides. (a) Aligned sequences of UniProtKB Q7XAU6_VITVI (Q7XA-) and UniProtKB O24530 (0245-) with the identified peptides
indicated in color and in bold font. Because the second and third
peptides are contiguous, the third is in italicized bold font. Mass
spectra for the major fragment ions (red, b ions; blue, y ions) matched
the theoretically predicted fragmentation of (b) peptide AAFLSALNSYSGFGNDGSTDANK,
(c) peptide TALWFWMNNVHSVIGQGFGATIR,
and (d) peptide AINGAVECNGGNTAAVNAR.Mascot ion score = [−10 log(P)], where P is the calculated probability
that the observed MS/MS match between the experimental data and the
database sequence is random.Because tetramers
and larger oligomers of GlcNAc were unavailable commercially, these
substrates were purified from a partial chitin hydrolysate by size
exclusion chromatography. Figure 3 shows the
purified oligomers (GlcNAc)3–5 separated by TLC.
The fractions were freeze-dried and resuspended in water at 10 mg/mL
for subsequent analyses. The oligomers (GlcNAc1–GlcNAc6) were incubated with enzyme or heat-inactivated enzyme, and
the reaction products were visualized by TLC (Figure 4). In Figure 4, spots are coded by
letter and number. Letters A–F indicate substrates GlcNAc1–GlcNAc6, respectively. Numbers indicate
treatment. Number 1 indicates incubation of substrate in the absence
of enzyme. Numbers 2 and 3 indicate incubation with enzyme or heat-inactivated
enzyme (100 °C for 5 min), respectively.
Figure 3
TLC analysis of a partial
HCl hydrolysate of chitin fractionated
by size exclusion chromatography. Lanes: 1, (GlcNAc)5;
2–4, (GlcNAc)4; 5–8, (GlcNAc)3.
Figure 4
TLC analysis of reaction products generated
by incubation of purified
chitinase with purified oligomers of GlcNAc. Spots are coded by letter
and number. Letters A–F indicate substrate GlcNAc1 to GlcNAc6, respectively. Number 1 indicates incubation
of substrate in the absence of enzyme. Numbers 2 and 3 indicate incubation
with enzyme or heat-inactivated enzyme (100 °C for 5 min), respectively.
TLC analysis of a partial
HCl hydrolysate of chitin fractionated
by size exclusion chromatography. Lanes: 1, (GlcNAc)5;
2–4, (GlcNAc)4; 5–8, (GlcNAc)3.TLC analysis of reaction products generated
by incubation of purified
chitinase with purified oligomers of GlcNAc. Spots are coded by letter
and number. Letters A–F indicate substrate GlcNAc1 to GlcNAc6, respectively. Number 1 indicates incubation
of substrate in the absence of enzyme. Numbers 2 and 3 indicate incubation
with enzyme or heat-inactivated enzyme (100 °C for 5 min), respectively.As expected, the monomer GlcNAc
was not affected (Figure 4A1–A3), nor
was N,N′-diacetylchitobiose
degraded (Figure 4B1–B3), indicating
an absence of 1,4-β-N-acetylglucosaminidase
activity. On the other hand, chitotriose
was split into the monomer GlcNAc and dimer N,N′-diacetylchitobiose (Figure 4C1–C3). Therefore, on the basis of the classification of Harman
et al.,[18] this grape enzyme should be considered
an exochitinase. However, as noted below, this designation is not
consistent with the products generated from degradation of the tetramer
(GlcNAc)4. The degradation of (GlcNAc)4 (Figure 4D1–D3) yielded both a dimer, as would be
expected if chitobiosidase activity alone were present, and the monomer.
On the basis of the absence of 1,4-β-N-acetylglucosaminidase
activity (Figure 4B1–B3), we speculate
that formation of the monomer was due to transient production of the
trimer during cleavage, suggesting an endochitinase-based mechanism.
Both monomer and dimer were also obtained from hydrolysis of the pentamer
(Figure 4E1–E3) and hexamer (Figure 4F1–F3) as previously observed with other
endochitinases.[25] The intermediate oligomers
present in lanes E3 and F3 (Figure 4) are likely
due to some chitinolitic activity present in the heat-denatured chitinase
samples. This can be due to an incomplete denaturation of the catalytic
domain or to its refolding upon cooling. Indeed, it was previously
demonstrated that the grape chitinase is able to recover its activity
after a 5 min treatment at 100 °C followed by SDS-PAGE migration.[32] The presence of oligomers is consistent with
endochitinase activity. These results are in agreement with a previous
study that found the major grape chitinases to be class IV endochitinases
on the basis of protein sequence.[4] However,
a chitinase purified from Bacillus brevis characterized as an endosplitting enzyme produced mostly oligomers
much larger than (GlcNAc)4 from a substrate consisting
of a hydrolysate of colloidal chitin.[26] In addition, it has been reported that to determine chitinase activity
from a variety of sources (e.g., soybean seeds[33] or Streptomyces(34)), a specific chitobiase is needed to degrade the disaccharide to
produce p-DMAB-reactive GlcNAc. In our case, it was possible to quantify
enzymatic activity directly using p-DMAB without the addition of an
exogenous chitobiase.The pattern of degradation products observed
here from various
GlcNAc oligomers is very similar to that reported for an Aspergillus fumigatuschitinase, presumed to be a
family 18 enzyme,[35] that exhibited exo-
and endochitinase and transglycosylation activities.[36] On the other hand, a chitinase from Pyrococcus
kodakaraensis classified as an endochitinase[25] produced (GlcNAc)2 and GlcNAc from
(GlcNAc)3 and (GlcNAc)2 along with small amounts
of GlcNAc from (GlcNAc)4–6.In summary, both
exochitinase activity and the previously described
endochitinase activity are suggested for the enzyme purified from
grape juice.
Determination of Temperature and pH Optima
for Chitinase
Enzyme activity was assessed as a function
of temperature and pH.
The optimal temperature for chitinase activity was evaluated between
10 and 70 °C (Figure 5). Highest activity
was observed between 30 and 40 °C, consistent with a 42 °C
optimum found for grape chitinase isolated from V. vinifera Red Globe.[21] At temperatures above 50
°C, activity was found to decrease drastically, in agreement
with a reported denaturation temperature of about 55 °C.[37] However, it must be noted that this latter result
was obtained at pH 3 and that later it was reported that the melting
temperature of the grape chitinase increased from 55 to 65 °C
by raising pH from 3 to 4.[31] Therefore, the 30% residual activity found here
after heating at 70 °C at pH 6 could be due to the effect of
pH. More recently, Saito et al. described three chitinase isoforms
in V. vinifera Semillon with temperature optima between
50 and 60 °C.[22]
Figure 5
Chitinase activity as
a function of temperature. Values are means
of three replicates, and error bars are standard deviations.
Chitinase activity as
a function of temperature. Values are means
of three replicates, and error bars are standard deviations.The optimal pH for activity was
found to be about 6, with relatively
high activity observed in the range pH 5–6.5 (Figure 6). The same optimum was found by Gomes et al., although
these researchers also detected a second peak of activity at about
pH 3.[21] In our case, outside the pH 5–6.5
range, including the pH of grape juice, 3–3.5, activity was
found to decrease sharply. On the other hand, chitinase isoforms purified
from Semillon exhibited an optimal pH in the range of 4–4.5.[22]
Figure 6
Chitinase activity as a function of pH. Values are means
of three
replicates, and error bars are standard deviations.
Chitinase activity as a function of pH. Values are means
of three
replicates, and error bars are standard deviations.Experiments performed at a pH and temperature close
to those of
winemaking conditions (25 °C and pH 3.2) demonstrated that the
enzyme retained 12% of its maximal activity (data not shown), suggesting
that residual activity could be present in grape must during fermentation.
Inhibition of Yeast Growth
Like other pathogenesis-related
plant proteins, chitinases are synthesized in response to biotic or
abiotic stresses. However, in grapes, they are also generally expressed
in a constitutive manner during ripening.[4] As a consequence, the concentration of chitinases can reach relatively
high levels in grape juice.[38,39] The question of whether
potential activity in grape juice could affect the major yeast species
that mediates the wine fermentation is thus relevant because the cell
wall of the wine yeastS. cerevisiae contains a small
amount of chitin (1–2% dry wt), localized in bud scars.[40] Indeed, a class IV-like chitinase from Streptomyces was found to inhibit growth of S. cerevisiae at pH 5.8.[41] Because chitinase activity
could potentially interfere with yeast growth under winemaking conditions,
the effect of chitinase on cell yields of four different strains of S. cerevisiae was assessed using very low initial inoculum
levels and an amount of chitinase expected in ripe grapes, 50 μg/mL.
Although this concentration was found to reduce cell yield of the
laboratory strain S288c by 30% and that of the wine strain EC1118
by 12% after 48 h in YNB + glu (Figure 7A),
after 72 h, no reduction in cell yield was observed for any of the
four strains tested (data not shown). In YNB + glu + tartrate, pH
3.5, a modest reduction in cell yield (12%) was observed only for
the Pilsen Lager strain after 72 h (Figure 7B). No reduction was observed for either the laboratory or wine strains
(data not shown). It is important to note that the chitinase activity
tested here was about 104 less than that previously reported
to inhibit growth of an unspecified strain of S. cerevisiae.[41]
Figure 7
Inhibition of yeast growth: (A) inhibition
after 48 h in YNB +
glu assessed as a reduction in cell yield (A600) in the presence of 50 μg of chitinase or boiled
chitinase (control) starting with an initial inoculum of 103 cells/mL; (B) inhibition after 72 h in YNB + glu + tartrate, pH
3.5 assessed as a reduction in cell yield (A600) in the presence of 50 μg of chitinase or boiled
chitinase (control) starting with an initial inoculum of 103 cells/mL. Data are means of triplicate assays. An asterisk indicates
a significant difference between treatment and control (Student’s
two-sided, two-tailed t test, p <
0.05).
Inhibition of yeast growth: (A) inhibition
after 48 h in YNB +
glu assessed as a reduction in cell yield (A600) in the presence of 50 μg of chitinase or boiled
chitinase (control) starting with an initial inoculum of 103 cells/mL; (B) inhibition after 72 h in YNB + glu + tartrate, pH
3.5 assessed as a reduction in cell yield (A600) in the presence of 50 μg of chitinase or boiled
chitinase (control) starting with an initial inoculum of 103 cells/mL. Data are means of triplicate assays. An asterisk indicates
a significant difference between treatment and control (Student’s
two-sided, two-tailed t test, p <
0.05).These data suggest that yeast
growth in a standard medium (YNB
+ glu) is slowed transiently if at all by the chitinase treatment
and that cells recover if given sufficient time. After 72 h at pH
3.5, only growth of the brewing strain was reduced (modestly). Whether
greater inhibition might be observed toward the wine strains during
vinification in actual grape must (pH 3–4) when cells are exposed
to greater osmotic stress at the higher initial sugar levels (∼20–25%)
and higher ethanol levels is an open question.In conclusion,
we speculate that chitinase is unlikely to have
an inhibitory effect on yeast growth during vinification, presuming
the activity tested here is representative of that present in grape
must and the fact that winemakers who use starter cultures typically
inoculate with at least 106 cells/mL, which is about 103-fold higher than the level evaluated in the present study.
Even if highly stressed cells might be more susceptible to chitinase-mediated
growth inhibition, such cells in a wine fermentation have ceased growth
for other reasons but continue to produce a significant amount of
ethanol during stationary phase. Thus, growth inhibition per se would
be unlikely to arrest fermentation, unless endogenous grape chitinase
levels were high enough to inhibit initial growth of the starter culture
or that of the naturally occurring yeasts present in uninoculated
fermentations. On the other hand, we do not know if chitinase can
interfere with fermentation in an indirect manner, unrelated to growth,
by inhibiting other cellular processes.
Authors: Matteo Marangon; Steven C Van Sluyter; Karlie A Neilson; Cherrine Chan; Paul A Haynes; Elizabeth J Waters; Robert J Falconer Journal: J Agric Food Chem Date: 2010-12-28 Impact factor: 5.279
Authors: P K Smith; R I Krohn; G T Hermanson; A K Mallia; F H Gartner; M D Provenzano; E K Fujimoto; N M Goeke; B J Olson; D C Klenk Journal: Anal Biochem Date: 1985-10 Impact factor: 3.365