Literature DB >> 24842302

Ochrovirga pacifica gen. nov., sp. nov., a novel agar-lytic marine bacterium of the family Flavobacteriaceae isolated from a seaweed.

Young-Kyung Kwon1, Ji Hyung Kim, Jennifer Jooyoun Kim, Sung-Hyun Yang, Bo-Ram Ye, Soo-Jin Heo, Jung-Ho Hyun, Zhong-Ji Qian, Heung-Sik Park, Do-Hyung Kang, Chulhong Oh.   

Abstract

A strain designated as S85(T) was isolated from a seaweed collected from coastal area of Chuuk State in Micronesia. The strain was gram-negative, rod-shaped, and non-motile and formed yellow colonies on the SWY agar (0.2 % yeast extract and 1.5 % agar in seawater) and Marine agar 2216. The strain grew at pH 5-9 (optimum, pH 8), at 15-40 °C (optimum, 25-28 °C), and with 1-9 % (w/v) NaCl (optimum, 3 %). The phylogenetic analysis based on 16S rRNA gene sequence showed that strain S85(T) was related to Lutibacter litoralis CL-TF09(T) and Maritimimonas rapanae A31(T) with 91.4 % and with 90.5 % similarity, respectively. The dominant fatty acids were iso-C15:0, iso-C15:0 3-OH and iso-C17:0 3-OH, C16:0 3-OH and summed feature 3 (C16:1 ω7c and/or iso-C15:0 2-OH). The major isoprenoid quinone was MK-6. The DNA G+C content of the type strain was 34.6 mol %. The major polar lipids were phosphatidylethanolamine, an unknown glycolipid and two unknown polar lipids. Based on this polyphasic taxonomic data, strain S85(T) stands for a novel species of a new genus, and we propose the name Ochrovirga pacifica gen. nov., sp. nov. The type strain of O. pacifica is S85(T) (=KCCM 90106 =JCM 18327(T)).

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Year:  2014        PMID: 24842302     DOI: 10.1007/s00284-014-0598-4

Source DB:  PubMed          Journal:  Curr Microbiol        ISSN: 0343-8651            Impact factor:   2.188


  26 in total

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Journal:  Mol Biol Evol       Date:  2011-05-04       Impact factor: 16.240

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Authors:  R Kobayashi; M Takisada; T Suzuki; K Kirimura; S Usami
Journal:  Biosci Biotechnol Biochem       Date:  1997-01       Impact factor: 2.043

4.  CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP.

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Journal:  Evolution       Date:  1985-07       Impact factor: 3.694

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Journal:  Int J Syst Evol Microbiol       Date:  2005-07       Impact factor: 2.747

6.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

7.  Complete genome sequence of strain s85, a novel member of the family Flavobacteriaceae.

Authors:  Chulhong Oh; Young-Kyung Kwon; Soo-Jin Heo; Mahanama De Zoysa; Abu Affan; Youngdeuk Lee; Jehee Lee; Young-Ung Choi; Heung-Sik Park; Kyung-Hwan Jung; Hyeon-Yong Lee; Do-Hyung Kang
Journal:  J Bacteriol       Date:  2011-11       Impact factor: 3.490

8.  Lutibacter litoralis gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from tidal flat sediment.

Authors:  Dong H Choi; Byung C Cho
Journal:  Int J Syst Evol Microbiol       Date:  2006-04       Impact factor: 2.747

9.  Maritimimonas rapanae gen. nov., sp. nov., isolated from gut microflora of the veined rapa whelk, Rapana venosa.

Authors:  Seong Chan Park; Keun Sik Baik; Duwoon Kim; Chi Nam Seong
Journal:  Int J Syst Evol Microbiol       Date:  2009-07-23       Impact factor: 2.747

10.  Macrophage stimulation activity of the polysaccharide fraction from a marine alga (Porphyra yezoensis): structure-function relationships and improved solubility.

Authors:  Y Yoshizawa; A Ametani; J Tsunehiro; K Nomura; M Itoh; F Fukui; S Kaminogawa
Journal:  Biosci Biotechnol Biochem       Date:  1995-10       Impact factor: 2.043

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  1 in total

1.  Crystal structure of a marine glycoside hydrolase family 99-related protein lacking catalytic machinery.

Authors:  Craig S Robb; Agata Anna Mystkowska; Jan-Hendrik Hehemann
Journal:  Protein Sci       Date:  2017-11-21       Impact factor: 6.725

  1 in total

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