Literature DB >> 24840829

A unifying study of phenotypic and molecular genetic variability in natural populations of Anadenanthera colubrina var. cebil from Yungas and Paranaense biogeographic provinces in Argentina.

María Victoria García1, Kathleen Prinz, María Eugenia Barrandeguy, Marcos Miretti, Reiner Finkeldey.   

Abstract

Anadenanthera colubrina var. cebil is a discontinuously distributed native tree species in South American subtropical forests. Thirteen quantitative traits and eight nuclear microsatellite loci were examined in individuals from two biogeographic provinces of Argentina to determine the number and composition of genetically distinguishable groups of individuals and explore possible spatial patterns of the phenotypic and genetic variability. Means of reproductive traits were higher in the Yungas than in the Paranaense biogeographic province, whereas five out of eight nonreproductive quantitative traits showed higher mean values in the latter. Variance coefficients were moderate, and there were significant differences between and within provinces. Three clusters were defined based on spatial model for cluster membership for quantitative traits. One cluster grouped the individuals from the Paranaense biogeographic province whereas the individuals from the Yungas biogeographic province grouped regarding its population of origin. Parameters of molecular genetic variability showed higher values in the Yungas than in the Paranaense biogeographic province. Observed heterozygosity was lower than expected heterozygosity in both biogeographic provinces, indicating an excess of homozygosity. The homozygosity test by Watterson and the exact test by Slatkin suggested diversifying selection for locus Ac41.1. Bayesian clustering spatial model for microsatellites loci data were performed for both all loci and for all loci excluding locus Ac41.1. In both analyses two clusters were inferred. Analysis of molecular variance revealed similar results for all genotypes and for all genotypes defined excluding locus Ac41.1. Most of the total variance is attributable to genetic variation within clusters. The presence of homogeneous clusters was detected for both the phenotypic and molecular genetic variability. Two Bayesian clustering analyses were performed according to molecular genetic data, and two clusters were inferred. Individuals were assigned to their provinces of origin. Genetic molecular variation was higher in the populations of the Yungas biogeographic province which translates into highly qualified populations for conservation. Populations from the Paranaense biogeographic province showed the highest mean value of number of seeds per fruit making them valuable as well with regard to the exploitation of management strategies as a means to recover the impacted areas where these populations are located.

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Mesh:

Year:  2014        PMID: 24840829     DOI: 10.1007/s12041-014-0347-2

Source DB:  PubMed          Journal:  J Genet        ISSN: 0022-1333            Impact factor:   1.166


  18 in total

1.  Microsatellite null alleles and estimation of population differentiation.

Authors:  Marie-Pierre Chapuis; Arnaud Estoup
Journal:  Mol Biol Evol       Date:  2006-12-05       Impact factor: 16.240

2.  The history of Seasonally Dry Tropical Forests in eastern South America: inferences from the genetic structure of the tree Astronium urundeuva (Anacardiaceae).

Authors:  S Caetano; D Prado; R T Pennington; S Beck; A Oliveira-Filho; R Spichiger; Y Naciri
Journal:  Mol Ecol       Date:  2008-05-30       Impact factor: 6.185

3.  A simple new method for estimating null allele frequency from heterozygote deficiency.

Authors:  J F Brookfield
Journal:  Mol Ecol       Date:  1996-06       Impact factor: 6.185

4.  A correction to the exact test based on the Ewens sampling distribution.

Authors:  M Slatkin
Journal:  Genet Res       Date:  1996-12       Impact factor: 1.588

5.  Development of microsatellite markers for Anadenanthera colubrina (Leguminosae), a neotropical tree species.

Authors:  Juliana Massimino Feres; Mariza Monteiro; Maria I Zucchi; José B Pinheiro; Moacyr A Mestriner; Ana Lilia Alzate-Marin
Journal:  Am J Bot       Date:  2012-03-23       Impact factor: 3.844

6.  Evidence of microsatellite hitch-hiking selection in Atlantic cod (Gadus morhua L.): implications for inferring population structure in nonmodel organisms.

Authors:  Einar E Nielsen; Michael M Hansen; Dorte Meldrup
Journal:  Mol Ecol       Date:  2006-10       Impact factor: 6.185

Review 7.  Genetics in geographically structured populations: defining, estimating and interpreting F(ST).

Authors:  Kent E Holsinger; Bruce S Weir
Journal:  Nat Rev Genet       Date:  2009-09       Impact factor: 53.242

8.  GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update.

Authors:  Rod Peakall; Peter E Smouse
Journal:  Bioinformatics       Date:  2012-07-20       Impact factor: 6.937

9.  Isolation by elevation: genetic structure at neutral and putatively non-neutral loci in a dominant tree of subtropical forests, Castanopsis eyrei.

Authors:  Miao-Miao Shi; Stefan G Michalski; Xiao-Yong Chen; Walter Durka
Journal:  PLoS One       Date:  2011-06-20       Impact factor: 3.240

10.  Effect of latitudinal gradient and impact of logging on genetic diversity of Cedrela lilloi along the Argentine Yungas Rainforest.

Authors:  Maria V Inza; Noga Zelener; Luis Fornes; Leonardo A Gallo
Journal:  Ecol Evol       Date:  2012-09-28       Impact factor: 2.912

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  1 in total

1.  Comparative characteristics of the genetic structure of the Syrian cattle breed compared to Holstein and Aberdeen-Angus breeds.

Authors:  Mohammad Almohammad Alsalh; Anatoly Bakai; Feyzullah Ramazanovich Feyzullaev; Ferdaus Rafailovna Bakai; Tatyana Viktorovna Lepekhina; Gayane Mkrtchyan; Anna Krovikova; Karina Mekhtieva; Ousama Alhammoud Alyaseen
Journal:  J Adv Vet Anim Res       Date:  2021-06-27
  1 in total

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