Literature DB >> 24836995

Prokaryotic Argonautes defend genomes against invasive DNA.

Junho K Hur1, Ivan Olovnikov2, Alexei A Aravin3.   

Abstract

Argonaute proteins are central players in small RNA-mediated silencing mechanisms such as RNA interference (RNAi), microRNA repression and piRNA-mediated transposon silencing. In eukaryotes, Argonautes bind small RNAs that guide them to RNA targets in order to regulate gene expression and repress invasive genomic elements. Although Argonaute proteins are conserved in all life forms from bacteria to eukaryotes, until now studies have focused on the biological functions of eukaryotic Argonautes. Here we highlight two recent studies that discover the functions of prokaryotic Argonautes in defence against exogenous DNA.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 24836995      PMCID: PMC4041519          DOI: 10.1016/j.tibs.2014.04.006

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  10 in total

1.  Crystal structure of Argonaute and its implications for RISC slicer activity.

Authors:  Ji-Joon Song; Stephanie K Smith; Gregory J Hannon; Leemor Joshua-Tor
Journal:  Science       Date:  2004-07-29       Impact factor: 47.728

Review 2.  RNA-guided genetic silencing systems in bacteria and archaea.

Authors:  Blake Wiedenheft; Samuel H Sternberg; Jennifer A Doudna
Journal:  Nature       Date:  2012-02-15       Impact factor: 49.962

3.  Crystal structure of A. aeolicus argonaute, a site-specific DNA-guided endoribonuclease, provides insights into RISC-mediated mRNA cleavage.

Authors:  Yu-Ren Yuan; Yi Pei; Jin-Biao Ma; Vitaly Kuryavyi; Maria Zhadina; Gunter Meister; Hong-Ying Chen; Zbigniew Dauter; Thomas Tuschl; Dinshaw J Patel
Journal:  Mol Cell       Date:  2005-08-05       Impact factor: 17.970

Review 4.  Small RNAs as guardians of the genome.

Authors:  Colin D Malone; Gregory J Hannon
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

Review 5.  Origins and Mechanisms of miRNAs and siRNAs.

Authors:  Richard W Carthew; Erik J Sontheimer
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

6.  Bacterial argonaute samples the transcriptome to identify foreign DNA.

Authors:  Ivan Olovnikov; Ken Chan; Ravi Sachidanandam; Dianne K Newman; Alexei A Aravin
Journal:  Mol Cell       Date:  2013-09-12       Impact factor: 17.970

7.  DNA-guided DNA interference by a prokaryotic Argonaute.

Authors:  Daan C Swarts; Matthijs M Jore; Edze R Westra; Yifan Zhu; Jorijn H Janssen; Ambrosius P Snijders; Yanli Wang; Dinshaw J Patel; José Berenguer; Stan J J Brouns; John van der Oost
Journal:  Nature       Date:  2014-02-16       Impact factor: 49.962

Review 8.  MicroRNAs: target recognition and regulatory functions.

Authors:  David P Bartel
Journal:  Cell       Date:  2009-01-23       Impact factor: 41.582

Review 9.  Small but sturdy: small RNAs in cellular memory and epigenetics.

Authors:  Evelyn Stuwe; Katalin Fejes Tóth; Alexei A Aravin
Journal:  Genes Dev       Date:  2014-03-01       Impact factor: 11.361

10.  Prokaryotic homologs of Argonaute proteins are predicted to function as key components of a novel system of defense against mobile genetic elements.

Authors:  Kira S Makarova; Yuri I Wolf; John van der Oost; Eugene V Koonin
Journal:  Biol Direct       Date:  2009-08-25       Impact factor: 4.540

  10 in total
  15 in total

Review 1.  Evolutionary change and phylogenetic relationships in light of horizontal gene transfer.

Authors:  Luis Boto
Journal:  J Biosci       Date:  2015-06       Impact factor: 1.826

2.  Recruitment of CRISPR-Cas systems by Tn7-like transposons.

Authors:  Joseph E Peters; Kira S Makarova; Sergey Shmakov; Eugene V Koonin
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-15       Impact factor: 11.205

Review 3.  Evolutionary Genomics of Defense Systems in Archaea and Bacteria.

Authors:  Eugene V Koonin; Kira S Makarova; Yuri I Wolf
Journal:  Annu Rev Microbiol       Date:  2017-06-28       Impact factor: 15.500

Review 4.  Evolution of adaptive immunity from transposable elements combined with innate immune systems.

Authors:  Eugene V Koonin; Mart Krupovic
Journal:  Nat Rev Genet       Date:  2014-12-09       Impact factor: 53.242

Review 5.  piRNA Biogenesis in Drosophila melanogaster.

Authors:  Xiawei Huang; Katalin Fejes Tóth; Alexei A Aravin
Journal:  Trends Genet       Date:  2017-09-27       Impact factor: 11.639

6.  Two symmetric arginine residues play distinct roles in Thermus thermophilus Argonaute DNA guide strand-mediated DNA target cleavage.

Authors:  Jinping Lei; Gang Sheng; Peter Pak-Hang Cheung; Shenglong Wang; Yu Li; Xin Gao; Yingkai Zhang; Yanli Wang; Xuhui Huang
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-27       Impact factor: 11.205

7.  Accommodation of Helical Imperfections in Rhodobacter sphaeroides Argonaute Ternary Complexes with Guide RNA and Target DNA.

Authors:  Yiwei Liu; Daria Esyunina; Ivan Olovnikov; Marianna Teplova; Andrey Kulbachinskiy; Alexei A Aravin; Dinshaw J Patel
Journal:  Cell Rep       Date:  2018-07-10       Impact factor: 9.423

8.  Mammalian Argonaute-DNA binding?

Authors:  Neil R Smalheiser; Octavio L A Gomes
Journal:  Biol Direct       Date:  2014-12-04       Impact factor: 4.540

Review 9.  Origin of eukaryotes from within archaea, archaeal eukaryome and bursts of gene gain: eukaryogenesis just made easier?

Authors:  Eugene V Koonin
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-09-26       Impact factor: 6.237

Review 10.  Mobile Genetic Elements and Evolution of CRISPR-Cas Systems: All the Way There and Back.

Authors:  Eugene V Koonin; Kira S Makarova
Journal:  Genome Biol Evol       Date:  2017-10-01       Impact factor: 3.416

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