Literature DB >> 24836323

CH-π hydrogen bonds in biological macromolecules.

Motohiro Nishio1, Yoji Umezawa, Jacques Fantini, Manfred S Weiss, Pinak Chakrabarti.   

Abstract

This is a sequel to the previous Perspective "The CH-π hydrogen bond in chemistry. Conformation, supramolecules, optical resolution and interactions involving carbohydrates", which featured in a PCCP themed issue on "Weak Hydrogen Bonds - Strong Effects?": Phys. Chem. Chem. Phys., 2011, 13, 13873-13900. Evidence that weak hydrogen bonds play an enormously important role in chemistry and biochemistry has now accumulated to an extent that the rigid classical concept of hydrogen bonds formulated by Pauling needs to be seriously revised and extended. The concept of a more generalized hydrogen bond definition is indispensable for understanding the folding mechanisms of proteins. The CH-π hydrogen bond, a weak molecular force occurring between a soft acid CH and a soft base π-electron system, among all is one of the most important and plays a functional role in defining the conformation and stability of 3D structures as well as in many molecular recognition events. This concept is also valuable in structure-based drug design efforts. Despite their frequent occurrence in organic molecules and bio-molecules, the importance of CH-π hydrogen bonds is still largely unknown to many chemists and biochemists. Here we present a review that deals with the evidence, nature, characteristics and consequences of the CH-π hydrogen bond in biological macromolecules (proteins, nucleic acids, lipids and polysaccharides). It is hoped that the present Perspective will show the importance of CH-π hydrogen bonds and stimulate interest in the interactions of biological macromolecules, one of the most fascinating fields in bioorganic chemistry. Implication of this concept is enormous and valuable in the scientific community.

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Year:  2014        PMID: 24836323     DOI: 10.1039/c4cp00099d

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  61 in total

1.  Insights into Thiol-Aromatic Interactions: A Stereoelectronic Basis for S-H/π Interactions.

Authors:  Christina R Forbes; Sudipta K Sinha; Himal K Ganguly; Shi Bai; Glenn P A Yap; Sandeep Patel; Neal J Zondlo
Journal:  J Am Chem Soc       Date:  2017-01-30       Impact factor: 15.419

2.  Insights into an efficient light-driven hybrid P450 BM3 enzyme from crystallographic, spectroscopic and biochemical studies.

Authors:  Jessica Spradlin; Diana Lee; Sruthi Mahadevan; Mavish Mahomed; Lawrence Tang; Quan Lam; Alexander Colbert; Oliver S Shafaat; David Goodin; Marco Kloos; Mallory Kato; Lionel E Cheruzel
Journal:  Biochim Biophys Acta       Date:  2016-09-14

3.  The Dependence of Carbohydrate-Aromatic Interaction Strengths on the Structure of the Carbohydrate.

Authors:  Che-Hsiung Hsu; Sangho Park; David E Mortenson; B Lachele Foley; Xiaocong Wang; Robert J Woods; David A Case; Evan T Powers; Chi-Huey Wong; H Jane Dyson; Jeffery W Kelly
Journal:  J Am Chem Soc       Date:  2016-06-14       Impact factor: 15.419

4.  Coumarin Derivatives as Substrate Probes of Mammalian Cytochromes P450 2B4 and 2B6: Assessing the Importance of 7-Alkoxy Chain Length, Halogen Substitution, and Non-Active Site Mutations.

Authors:  Jingbao Liu; Manish B Shah; Qinghai Zhang; C David Stout; James R Halpert; P Ross Wilderman
Journal:  Biochemistry       Date:  2016-03-24       Impact factor: 3.162

5.  The structural bases for agonist diversity in an Arabidopsis thaliana glutamate receptor-like channel.

Authors:  Andrea Alfieri; Fabrizio G Doccula; Riccardo Pederzoli; Matteo Grenzi; Maria Cristina Bonza; Laura Luoni; Alessia Candeo; Neli Romano Armada; Alberto Barbiroli; Gianluca Valentini; Thomas R Schneider; Andrea Bassi; Martino Bolognesi; Marco Nardini; Alex Costa
Journal:  Proc Natl Acad Sci U S A       Date:  2019-12-23       Impact factor: 11.205

6.  Cyclic di-AMP, a second messenger of primary importance: tertiary structures and binding mechanisms.

Authors:  Jin He; Wen Yin; Michael Y Galperin; Shan-Ho Chou
Journal:  Nucleic Acids Res       Date:  2020-04-06       Impact factor: 16.971

7.  Glutamate transporter homolog-based model predicts that anion-π interaction is the mechanism for the voltage-dependent response of prestin.

Authors:  Sándor Lovas; David Z Z He; Huizhan Liu; Jie Tang; Jason L Pecka; Marcus P D Hatfield; Kirk W Beisel
Journal:  J Biol Chem       Date:  2015-08-17       Impact factor: 5.157

8.  Membrane cholesterol depletion as a trigger of Nav1.9 channel-mediated inflammatory pain.

Authors:  Muriel Amsalem; Corinne Poilbout; Géraldine Ferracci; Patrick Delmas; Francoise Padilla
Journal:  EMBO J       Date:  2018-02-19       Impact factor: 11.598

9.  Coulomb and CH-π interactions in (6-4) photolyase-DNA complex dominate DNA binding and repair abilities.

Authors:  Yuma Terai; Ryuma Sato; Takahiro Yumiba; Ryuhei Harada; Kohei Shimizu; Tatsuya Toga; Tomoko Ishikawa-Fujiwara; Takeshi Todo; Shigenori Iwai; Yasuteru Shigeta; Junpei Yamamoto
Journal:  Nucleic Acids Res       Date:  2018-07-27       Impact factor: 16.971

10.  A Comprehensive Analysis of Anion-Quadrupole Interactions in Protein Structures.

Authors:  Suvobrata Chakravarty; Adron R Ung; Brian Moore; Jay Shore; Mona Alshamrani
Journal:  Biochemistry       Date:  2018-03-09       Impact factor: 3.162

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