Literature DB >> 24828529

Unveiling translocation intermediates of RNA polymerase.

Masahiko Imashimizu1, Mikhail Kashlev2.   

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Year:  2014        PMID： 24828529      PMCID： PMC4040548          DOI： 10.1073/pnas.1406413111

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  27 in total

1.  Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.

Authors:  G Zhang; E A Campbell; L Minakhin; C Richter; K Severinov; S A Darst
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Review 2.  Nanobiology of RNA polymerase: biological consequence of inhomogeneity in reactant.

Authors:  Nobuo Shimamoto
Journal:  Chem Rev       Date:  2013-09-27       Impact factor: 60.622

3.  Dynamics of pyrophosphate ion release and its coupled trigger loop motion from closed to open state in RNA polymerase II.

Authors:  Lin-Tai Da; Dong Wang; Xuhui Huang
Journal:  J Am Chem Soc       Date:  2012-01-24       Impact factor: 15.419

4.  Regulating the regulators: the pervasive effects of Pol II pausing on stimulus-responsive gene networks.

Authors:  Daniel A Gilchrist; George Fromm; Gilberto dos Santos; Linh N Pham; Ivy E McDaniel; Adam Burkholder; David C Fargo; Karen Adelman
Journal:  Genes Dev       Date:  2012-05-01       Impact factor: 11.361

5.  Probing sequence-specific DNA flexibility in a-tracts and pyrimidine-purine steps by nuclear magnetic resonance (13)C relaxation and molecular dynamics simulations.

Authors:  Evgenia N Nikolova; Gavin D Bascom; Ioan Andricioaei; Hashim M Al-Hashimi
Journal:  Biochemistry       Date:  2012-10-18       Impact factor: 3.162

6.  Contribution of the tyrosines to the structure and function of the human U1A N-terminal RNA binding domain.

Authors:  J K Kranz; J Lu; K B Hall
Journal:  Protein Sci       Date:  1996-08       Impact factor: 6.725

Review 7.  Macromolecular micromovements: how RNA polymerase translocates.

Authors:  Vladimir Svetlov; Evgeny Nudler
Journal:  Curr Opin Struct Biol       Date:  2009-11-02       Impact factor: 6.809

Review 8.  NusG-Spt5 proteins-Universal tools for transcription modification and communication.

Authors:  Sushil Kumar Tomar; Irina Artsimovitch
Journal:  Chem Rev       Date:  2013-05-02       Impact factor: 60.622

9.  Active site opening and closure control translocation of multisubunit RNA polymerase.

Authors:  Anssi M Malinen; Matti Turtola; Marimuthu Parthiban; Lioudmila Vainonen; Mark S Johnson; Georgiy A Belogurov
Journal:  Nucleic Acids Res       Date:  2012-05-08       Impact factor: 16.971

10.  Complete dissection of transcription elongation reveals slow translocation of RNA polymerase II in a linear ratchet mechanism.

Authors:  Manchuta Dangkulwanich; Toyotaka Ishibashi; Shixin Liu; Maria L Kireeva; Lucyna Lubkowska; Mikhail Kashlev; Carlos J Bustamante
Journal:  Elife       Date:  2013-09-24       Impact factor: 8.140
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  3 in total

1.  Production and characterization of a highly pure RNA polymerase holoenzyme from Mycobacterium tuberculosis.

Authors:  Omar Herrera-Asmat; Lucyna Lubkowska; Mikhail Kashlev; Carlos J Bustamante; Daniel G Guerra; Maria L Kireeva
Journal:  Protein Expr Purif       Date:  2017-03-18       Impact factor: 1.650

2.  Visualizing translocation dynamics and nascent transcript errors in paused RNA polymerases in vivo.

Authors:  Masahiko Imashimizu; Hiroki Takahashi; Taku Oshima; Carl McIntosh; Mikhail Bubunenko; Donald L Court; Mikhail Kashlev
Journal:  Genome Biol       Date:  2015-05-15       Impact factor: 13.583

3.  Hinge action versus grip in translocation by RNA polymerase.

Authors:  Yuri A Nedialkov; Kristopher Opron; Hailey L Caudill; Fadi Assaf; Amanda J Anderson; Robert I Cukier; Guowei Wei; Zachary F Burton
Journal:  Transcription       Date:  2017-08-30
  3 in total

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