Literature DB >> 24074222

Nanobiology of RNA polymerase: biological consequence of inhomogeneity in reactant.

Nobuo Shimamoto1.   

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Year:  2013        PMID: 24074222     DOI: 10.1021/cr400006b

Source DB:  PubMed          Journal:  Chem Rev        ISSN: 0009-2665            Impact factor:   60.622


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  12 in total

Review 1.  The Mechanisms of Substrate Selection, Catalysis, and Translocation by the Elongating RNA Polymerase.

Authors:  Georgiy A Belogurov; Irina Artsimovitch
Journal:  J Mol Biol       Date:  2019-05-31       Impact factor: 5.469

2.  Control of transcriptional pausing by biased thermal fluctuations on repetitive genomic sequences.

Authors:  Masahiko Imashimizu; Ariel Afek; Hiroki Takahashi; Lucyna Lubkowska; David B Lukatsky
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-08       Impact factor: 11.205

3.  Unveiling translocation intermediates of RNA polymerase.

Authors:  Masahiko Imashimizu; Mikhail Kashlev
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-14       Impact factor: 11.205

4.  The Role of Pyrophosphorolysis in the Initiation-to-Elongation Transition by E. coli RNA Polymerase.

Authors:  Masahiko Imashimizu; Maria L Kireeva; Lucyna Lubkowska; Mikhail Kashlev; Nobuo Shimamoto
Journal:  J Mol Biol       Date:  2019-04-26       Impact factor: 5.469

Review 5.  Ideas and methods of nonlinear mathematics and theoretical physics in DNA science: the McLaughlin-Scott equation and its application to study the DNA open state dynamics.

Authors:  Ludmila V Yakushevich; Larisa A Krasnobaeva
Journal:  Biophys Rev       Date:  2021-05-13

6.  Residence time analysis of RNA polymerase transcription dynamics: A Bayesian sticky HMM approach.

Authors:  Zeliha Kilic; Ioannis Sgouralis; Steve Pressé
Journal:  Biophys J       Date:  2021-03-09       Impact factor: 4.033

7.  Activation and reactivation of the RNA polymerase II trigger loop for intrinsic RNA cleavage and catalysis.

Authors:  Pavel Čabart; Huiyan Jin; Liangtao Li; Craig D Kaplan
Journal:  Transcription       Date:  2014

8.  Visualizing translocation dynamics and nascent transcript errors in paused RNA polymerases in vivo.

Authors:  Masahiko Imashimizu; Hiroki Takahashi; Taku Oshima; Carl McIntosh; Mikhail Bubunenko; Donald L Court; Mikhail Kashlev
Journal:  Genome Biol       Date:  2015-05-15       Impact factor: 13.583

Review 9.  Transcription elongation. Heterogeneous tracking of RNA polymerase and its biological implications.

Authors:  Masahiko Imashimizu; Nobuo Shimamoto; Taku Oshima; Mikhail Kashlev
Journal:  Transcription       Date:  2014

10.  Transcription pausing: biological significance of thermal fluctuations biased by repetitive genomic sequences.

Authors:  Masahiko Imashimizu; David B Lukatsky
Journal:  Transcription       Date:  2017-12-01
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