Literature DB >> 24826139

Methyl (2Z)-2-[(2-formyl-3-methyl-1H-indol-1-yl)meth-yl]-3-(4-meth-oxy-phen-yl)prop-2-enoate.

S Selvanayagam1, B Sridhar2, S Kathiravan3, R Raghunathan3.   

Abstract

In the title indole derivative, C22H21NO4, the dihedral angle between the benzene and pyrrole rings of indole moiety is 1.8 (1)°. The plane of the 4-meth-oxy-phenyl ring is oriented with a dihedral angle of 60.7 (1)° with respect to the plane of the indole moiety. The mol-ecular packing is stabilized by C-H⋯O hydrogen bonds which form a V-shaped chain arrangement along the bc plane of the unit cell. In addition to this, C-H⋯π and π-π inter-actions [centroid-centroid distances = 3.8102 (11) and 3.8803(12) Å], which run along the b-axis direction, stabilize the mol-ecular packing.

Entities:  

Year:  2014        PMID: 24826139      PMCID: PMC3998543          DOI: 10.1107/S1600536814005261

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to indole derivatives, see: Kaushik et al. (2013 ▶); Singh et al. (2000 ▶); Andreani et al. (2001 ▶); Grinev et al. (1984 ▶); Rodriguez et al. (1985 ▶). For a related structure, see: Selvanayagam et al. (2008 ▶). For the superposition of a related structure, see: Gans & Shalloway (2001 ▶)

Experimental

Crystal data

C22H21NO4 M = 363.40 Monoclinic, a = 12.6009 (13) Å b = 10.7458 (11) Å c = 14.8937 (16) Å β = 111.954 (2)° V = 1870.5 (3) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 292 K 0.20 × 0.18 × 0.16 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer 21494 measured reflections 4462 independent reflections 3214 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.143 S = 1.01 4462 reflections 247 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.15 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL2013 and PLATON. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536814005261/zq2219sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814005261/zq2219Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814005261/zq2219Isup3.cml CCDC reference: 990594 Additional supporting information: crystallographic information; 3D view; checkCIF report
C22H21NO4F(000) = 768
Mr = 363.40Dx = 1.290 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 12.6009 (13) ÅCell parameters from 13428 reflections
b = 10.7458 (11) Åθ = 2.2–27.7°
c = 14.8937 (16) ŵ = 0.09 mm1
β = 111.954 (2)°T = 292 K
V = 1870.5 (3) Å3Block, colourless
Z = 40.20 × 0.18 × 0.16 mm
Bruker SMART APEX CCD area-detector diffractometerRint = 0.030
Radiation source: fine-focus sealed tubeθmax = 28.0°, θmin = 1.8°
ω scansh = −16→16
21494 measured reflectionsk = −14→14
4462 independent reflectionsl = −19→19
3214 reflections with I > 2σ(I)
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.052H-atom parameters constrained
wR(F2) = 0.143w = 1/[σ2(Fo2) + (0.069P)2 + 0.3592P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max = 0.001
4462 reflectionsΔρmax = 0.21 e Å3
247 parametersΔρmin = −0.15 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
O11.09513 (15)0.60014 (19)0.38553 (11)0.1024 (6)
O20.73093 (13)0.23166 (15)0.23313 (11)0.0890 (5)
O30.83214 (11)0.40122 (13)0.29526 (9)0.0682 (4)
O40.44555 (12)0.52878 (12)−0.32562 (9)0.0700 (4)
N10.93920 (10)0.46791 (12)0.15072 (9)0.0437 (3)
C10.97938 (13)0.39988 (13)0.09250 (12)0.0453 (4)
C20.92204 (16)0.35281 (16)0.00003 (13)0.0555 (4)
H20.84370.3640−0.03210.067*
C30.9859 (2)0.28912 (17)−0.04190 (16)0.0710 (6)
H30.94990.2570−0.10390.085*
C41.1026 (2)0.27130 (18)0.00578 (19)0.0789 (7)
H41.14280.2267−0.02470.095*
C51.15958 (17)0.31737 (18)0.09595 (18)0.0709 (6)
H51.23790.30470.12700.085*
C61.09796 (14)0.38477 (15)0.14165 (13)0.0534 (4)
C71.12943 (14)0.44737 (16)0.23098 (13)0.0559 (4)
C81.03115 (13)0.49785 (15)0.23520 (12)0.0481 (4)
C91.24838 (17)0.4581 (3)0.30555 (18)0.0886 (7)
H9A1.25840.53880.33520.133*
H9B1.30280.44710.27510.133*
H9C1.26010.39520.35410.133*
C100.81868 (12)0.50076 (14)0.12346 (12)0.0450 (3)
H10A0.79000.53480.05840.054*
H10B0.81180.56460.16700.054*
C110.74697 (12)0.39005 (14)0.12710 (12)0.0469 (4)
C120.76846 (14)0.33019 (18)0.22202 (13)0.0571 (4)
C130.8478 (2)0.3602 (3)0.39105 (15)0.0955 (8)
H13A0.77490.35650.39760.143*
H13B0.89670.41760.43760.143*
H13C0.88220.27910.40200.143*
C140.66281 (13)0.34297 (16)0.05107 (12)0.0521 (4)
H140.63210.26850.06210.063*
C150.61153 (12)0.39180 (15)−0.04761 (12)0.0483 (4)
C160.57841 (15)0.31163 (16)−0.12596 (13)0.0573 (4)
H160.59270.2270−0.11500.069*
C170.52504 (16)0.35310 (17)−0.21948 (13)0.0588 (4)
H170.50590.2973−0.27080.071*
C180.49998 (14)0.47814 (16)−0.23680 (12)0.0514 (4)
C190.53108 (14)0.55973 (15)−0.15976 (13)0.0530 (4)
H190.51470.6440−0.17080.064*
C200.58585 (13)0.51745 (15)−0.06720 (12)0.0508 (4)
H200.60640.5739−0.01620.061*
C210.4105 (3)0.4468 (2)−0.40614 (16)0.0957 (8)
H21A0.47600.4035−0.40860.144*
H21B0.37510.4937−0.46460.144*
H21C0.35670.3877−0.39960.144*
C221.01886 (18)0.57581 (18)0.30950 (14)0.0651 (5)
H220.94710.60980.29810.078*
U11U22U33U12U13U23
O10.0958 (12)0.1354 (16)0.0626 (9)−0.0236 (11)0.0141 (8)−0.0265 (9)
O20.0856 (10)0.0859 (10)0.0928 (11)−0.0224 (8)0.0304 (8)0.0320 (8)
O30.0729 (8)0.0836 (9)0.0526 (7)−0.0043 (7)0.0284 (6)0.0071 (6)
O40.0881 (9)0.0592 (8)0.0563 (8)0.0043 (7)0.0197 (7)−0.0027 (6)
N10.0396 (6)0.0444 (7)0.0481 (7)−0.0008 (5)0.0174 (6)0.0023 (5)
C10.0491 (8)0.0369 (7)0.0578 (9)−0.0016 (6)0.0290 (7)0.0064 (7)
C20.0657 (10)0.0494 (9)0.0614 (10)−0.0101 (8)0.0351 (9)−0.0008 (8)
C30.0993 (16)0.0541 (11)0.0823 (13)−0.0183 (10)0.0601 (12)−0.0107 (9)
C40.1000 (17)0.0518 (11)0.1216 (19)−0.0048 (10)0.0836 (16)−0.0062 (12)
C50.0616 (11)0.0558 (11)0.1150 (17)0.0047 (9)0.0556 (12)0.0115 (11)
C60.0482 (9)0.0452 (9)0.0750 (12)0.0008 (7)0.0324 (8)0.0135 (8)
C70.0436 (8)0.0562 (10)0.0655 (11)−0.0032 (7)0.0177 (8)0.0156 (8)
C80.0448 (8)0.0475 (8)0.0499 (9)−0.0061 (6)0.0152 (7)0.0068 (7)
C90.0472 (11)0.1087 (18)0.0958 (17)−0.0028 (11)0.0107 (10)0.0148 (14)
C100.0420 (8)0.0429 (8)0.0502 (8)0.0020 (6)0.0173 (7)0.0027 (7)
C110.0396 (8)0.0479 (9)0.0575 (10)0.0023 (6)0.0232 (7)0.0046 (7)
C120.0454 (9)0.0649 (11)0.0660 (11)0.0019 (8)0.0266 (8)0.0137 (9)
C130.0927 (16)0.144 (2)0.0604 (13)0.0094 (15)0.0402 (12)0.0229 (14)
C140.0445 (8)0.0483 (9)0.0676 (11)−0.0025 (7)0.0255 (8)0.0015 (8)
C150.0373 (7)0.0489 (9)0.0602 (10)−0.0023 (6)0.0201 (7)−0.0044 (7)
C160.0573 (10)0.0437 (9)0.0696 (12)−0.0010 (7)0.0221 (9)−0.0051 (8)
C170.0648 (11)0.0505 (10)0.0601 (11)−0.0014 (8)0.0220 (9)−0.0133 (8)
C180.0484 (9)0.0522 (9)0.0554 (10)0.0004 (7)0.0215 (8)−0.0047 (7)
C190.0497 (9)0.0432 (8)0.0661 (11)0.0039 (7)0.0216 (8)−0.0042 (8)
C200.0442 (8)0.0478 (9)0.0598 (10)0.0007 (7)0.0186 (7)−0.0122 (7)
C210.138 (2)0.0762 (15)0.0564 (12)0.0015 (14)0.0173 (13)−0.0096 (11)
C220.0671 (11)0.0654 (11)0.0594 (11)−0.0121 (9)0.0198 (9)−0.0061 (9)
O1—C221.209 (2)C9—H9C0.9600
O2—C121.196 (2)C10—C111.507 (2)
O3—C121.327 (2)C10—H10A0.9700
O3—C131.435 (2)C10—H10B0.9700
O4—C181.356 (2)C11—C141.328 (2)
O4—C211.419 (2)C11—C121.483 (2)
N1—C11.3678 (19)C13—H13A0.9600
N1—C81.3926 (19)C13—H13B0.9600
N1—C101.4610 (18)C13—H13C0.9600
C1—C21.390 (2)C14—C151.464 (2)
C1—C61.406 (2)C14—H140.9300
C2—C31.371 (3)C15—C161.383 (2)
C2—H20.9300C15—C201.394 (2)
C3—C41.387 (3)C16—C171.375 (2)
C3—H30.9300C16—H160.9300
C4—C51.358 (3)C17—C181.382 (2)
C4—H40.9300C17—H170.9300
C5—C61.409 (3)C18—C191.379 (2)
C5—H50.9300C19—C201.368 (2)
C6—C71.409 (3)C19—H190.9300
C7—C81.375 (2)C20—H200.9300
C7—C91.499 (3)C21—H21A0.9600
C8—C221.442 (3)C21—H21B0.9600
C9—H9A0.9600C21—H21C0.9600
C9—H9B0.9600C22—H220.9300
C12—O3—C13117.18 (17)C14—C11—C10124.63 (15)
C18—O4—C21117.36 (15)C12—C11—C10118.58 (14)
C1—N1—C8108.43 (13)O2—C12—O3122.96 (17)
C1—N1—C10123.07 (13)O2—C12—C11125.11 (18)
C8—N1—C10128.50 (13)O3—C12—C11111.89 (15)
N1—C1—C2130.12 (15)O3—C13—H13A109.5
N1—C1—C6107.75 (14)O3—C13—H13B109.5
C2—C1—C6122.11 (15)H13A—C13—H13B109.5
C3—C2—C1117.19 (18)O3—C13—H13C109.5
C3—C2—H2121.4H13A—C13—H13C109.5
C1—C2—H2121.4H13B—C13—H13C109.5
C2—C3—C4121.7 (2)C11—C14—C15129.15 (15)
C2—C3—H3119.1C11—C14—H14115.4
C4—C3—H3119.1C15—C14—H14115.4
C5—C4—C3121.58 (18)C16—C15—C20116.97 (16)
C5—C4—H4119.2C16—C15—C14120.29 (15)
C3—C4—H4119.2C20—C15—C14122.56 (15)
C4—C5—C6118.82 (19)C17—C16—C15122.12 (16)
C4—C5—H5120.6C17—C16—H16118.9
C6—C5—H5120.6C15—C16—H16118.9
C1—C6—C7107.79 (14)C16—C17—C18119.69 (16)
C1—C6—C5118.56 (18)C16—C17—H17120.2
C7—C6—C5133.63 (18)C18—C17—H17120.2
C8—C7—C6106.93 (14)O4—C18—C19116.06 (15)
C8—C7—C9127.16 (19)O4—C18—C17124.70 (15)
C6—C7—C9125.90 (18)C19—C18—C17119.24 (16)
C7—C8—N1109.09 (15)C20—C19—C18120.44 (16)
C7—C8—C22128.42 (16)C20—C19—H19119.8
N1—C8—C22122.41 (15)C18—C19—H19119.8
C7—C9—H9A109.5C19—C20—C15121.53 (15)
C7—C9—H9B109.5C19—C20—H20119.2
H9A—C9—H9B109.5C15—C20—H20119.2
C7—C9—H9C109.5O4—C21—H21A109.5
H9A—C9—H9C109.5O4—C21—H21B109.5
H9B—C9—H9C109.5H21A—C21—H21B109.5
N1—C10—C11111.97 (12)O4—C21—H21C109.5
N1—C10—H10A109.2H21A—C21—H21C109.5
C11—C10—H10A109.2H21B—C21—H21C109.5
N1—C10—H10B109.2O1—C22—C8124.7 (2)
C11—C10—H10B109.2O1—C22—H22117.7
H10A—C10—H10B107.9C8—C22—H22117.7
C14—C11—C12116.77 (15)
C8—N1—C1—C2−177.30 (15)C8—N1—C10—C11−108.02 (17)
C10—N1—C1—C22.3 (2)N1—C10—C11—C14−117.11 (17)
C8—N1—C1—C61.06 (16)N1—C10—C11—C1264.62 (18)
C10—N1—C1—C6−179.33 (12)C13—O3—C12—O2−5.0 (3)
N1—C1—C2—C3178.78 (15)C13—O3—C12—C11172.89 (16)
C6—C1—C2—C30.6 (2)C14—C11—C12—O213.9 (3)
C1—C2—C3—C40.4 (3)C10—C11—C12—O2−167.73 (18)
C2—C3—C4—C5−0.8 (3)C14—C11—C12—O3−163.96 (15)
C3—C4—C5—C60.0 (3)C10—C11—C12—O314.4 (2)
N1—C1—C6—C7−0.97 (17)C12—C11—C14—C15170.52 (15)
C2—C1—C6—C7177.54 (14)C10—C11—C14—C15−7.8 (3)
N1—C1—C6—C5−179.87 (14)C11—C14—C15—C16142.41 (18)
C2—C1—C6—C5−1.4 (2)C11—C14—C15—C20−42.6 (2)
C4—C5—C6—C11.0 (3)C20—C15—C16—C171.6 (2)
C4—C5—C6—C7−177.55 (18)C14—C15—C16—C17176.85 (16)
C1—C6—C7—C80.51 (17)C15—C16—C17—C18−2.0 (3)
C5—C6—C7—C8179.17 (17)C21—O4—C18—C19−178.81 (19)
C1—C6—C7—C9−178.39 (17)C21—O4—C18—C171.0 (3)
C5—C6—C7—C90.3 (3)C16—C17—C18—O4−178.54 (16)
C6—C7—C8—N10.14 (17)C16—C17—C18—C191.2 (3)
C9—C7—C8—N1179.02 (17)O4—C18—C19—C20179.64 (15)
C6—C7—C8—C22−176.54 (16)C17—C18—C19—C20−0.2 (2)
C9—C7—C8—C222.3 (3)C18—C19—C20—C15−0.2 (2)
C1—N1—C8—C7−0.75 (17)C16—C15—C20—C19−0.4 (2)
C10—N1—C8—C7179.66 (13)C14—C15—C20—C19−175.62 (14)
C1—N1—C8—C22176.17 (14)C7—C8—C22—O1−6.8 (3)
C10—N1—C8—C22−3.4 (2)N1—C8—C22—O1176.90 (19)
C1—N1—C10—C1172.45 (17)
D—H···AD—HH···AD···AD—H···A
C9—H9A···O10.962.533.033 (3)113
C14—H14···O20.932.412.789 (2)104
C10—H10B···O2i0.972.513.480 (2)173
C22—H22···O2i0.932.493.409 (3)171
C17—H17···Cg1ii0.932.763.573 (2)146
C21—H21A···Cg2ii0.962.843.635 (3)140
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the N1/C1/C6–C8 and C1–C6 rings, respectively.

D—H⋯A D—HH⋯A DA D—H⋯A
C9—H9A⋯O10.962.533.033 (3)113
C14—H14⋯O20.932.412.789 (2)104
C10—H10B⋯O2i 0.972.513.480 (2)173
C22—H22⋯O2i 0.932.493.409 (3)171
C17—H17⋯Cg1ii 0.932.763.573 (2)146
C21—H21ACg2ii 0.962.843.635 (3)140

Symmetry codes: (i) ; (ii) .

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3.  A short history of SHELX.

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Review 6.  Biomedical importance of indoles.

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7.  Structure validation in chemical crystallography.

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  1 in total

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