Literature DB >> 24826113

6,6'-Di-nitro-1,1'-(ethane-1,2-di-yl)di(1H-indazole).

Assoman Kouakou1, El Mostapha Rakib1, Abdelghani El Malki1, Mohamed Saadi2, Lahcen El Ammari2.   

Abstract

The mol-ecule of the title compound, C16H12N6O4, is built up from two fused five- and six-membered rings linked by an ethyl-ene group. The dihedral angle between the planes through the indazole ring systems is 39.74 (5)°. The nitro groups are tilted by 7.2 (2) and 8.5 (2)° with respect to planes of the fused-ring systems. In the crystal, mol-ecules are linked by C-H⋯N and C-H⋯O hydrogen bonds into chains running parallel to the c axis.

Entities:  

Year:  2014        PMID: 24826113      PMCID: PMC3998527          DOI: 10.1107/S1600536814004516

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biological activities of the indazole moiety, see: Ali et al. (2012 ▶); Abbassi et al. (2012 ▶); Plescia et al. (2010 ▶); Lee et al. (2001 ▶); Liu et al. (2011 ▶). For related compounds, see: Kouakou et al. (2013 ▶); Chicha et al. (2013 ▶).

Experimental

Crystal data

C16H12N6O4 M = 352.32 Monoclinic, a = 9.410 (5) Å b = 12.064 (5) Å c = 14.804 (4) Å β = 109.01 (2)° V = 1588.9 (12) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 296 K 0.37 × 0.32 × 0.26 mm

Data collection

Bruker X8 APEX diffractometer 16446 measured reflections 3503 independent reflections 2667 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.111 S = 1.03 3503 reflections 236 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.19 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814004516/rz5107sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814004516/rz5107Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814004516/rz5107Isup3.cml CCDC reference: 988920 Additional supporting information: crystallographic information; 3D view; checkCIF report
C16H12N6O4F(000) = 728
Mr = 352.32Dx = 1.473 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3672 reflections
a = 9.410 (5) Åθ = 1.5–27.1°
b = 12.064 (5) ŵ = 0.11 mm1
c = 14.804 (4) ÅT = 296 K
β = 109.01 (2)°Block, colourless
V = 1588.9 (12) Å30.37 × 0.32 × 0.26 mm
Z = 4
Bruker X8 APEX diffractometer2667 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.033
Graphite monochromatorθmax = 27.1°, θmin = 2.8°
φ and ω scansh = −12→12
16446 measured reflectionsk = −15→15
3503 independent reflectionsl = −18→18
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.039H-atom parameters constrained
wR(F2) = 0.111w = 1/[σ2(Fo2) + (0.0493P)2 + 0.3594P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
3503 reflectionsΔρmax = 0.20 e Å3
236 parametersΔρmin = −0.19 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0033 (10)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against all reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on all data will be even larger.
xyzUiso*/Ueq
O10.72668 (16)0.44512 (14)0.20575 (10)0.0753 (4)
O20.8642 (2)0.57503 (14)0.28985 (14)0.1037 (6)
O31.06798 (18)0.14604 (14)0.75890 (9)0.0817 (5)
O41.28535 (16)0.17800 (15)0.74730 (11)0.0990 (6)
N10.78171 (17)0.49484 (13)0.28105 (13)0.0617 (4)
N20.53003 (16)0.25102 (14)0.54188 (9)0.0580 (4)
N30.54014 (13)0.24766 (11)0.45233 (8)0.0435 (3)
N40.74940 (12)0.09097 (10)0.40649 (8)0.0384 (3)
N50.74567 (15)0.09998 (12)0.31430 (8)0.0487 (3)
N61.15060 (18)0.16124 (12)0.71175 (11)0.0612 (4)
C10.74301 (17)0.45822 (13)0.36515 (12)0.0474 (4)
C20.7928 (2)0.52228 (15)0.44873 (15)0.0630 (5)
H20.85350.58390.45150.076*
C30.7517 (2)0.49382 (17)0.52569 (14)0.0669 (5)
H30.78170.53670.58090.080*
C40.66362 (18)0.39900 (15)0.52037 (11)0.0504 (4)
C50.62089 (15)0.33505 (12)0.43641 (10)0.0386 (3)
C60.65760 (16)0.36455 (12)0.35590 (10)0.0407 (3)
H60.62630.32340.29970.049*
C70.6008 (2)0.34107 (18)0.58152 (12)0.0645 (5)
H70.60900.36440.64290.077*
C80.49431 (15)0.14827 (13)0.39587 (11)0.0439 (4)
H8A0.47470.16590.32900.053*
H8B0.40170.12080.40300.053*
C90.61375 (15)0.05839 (13)0.42568 (11)0.0443 (4)
H9A0.63750.04360.49340.053*
H9B0.5748−0.00940.39120.053*
C100.87881 (19)0.13663 (14)0.31726 (11)0.0505 (4)
H100.90670.15010.26350.061*
C110.97408 (16)0.15298 (12)0.41201 (10)0.0401 (3)
C121.12332 (17)0.18656 (13)0.45625 (13)0.0511 (4)
H121.18300.20740.41990.061*
C131.17921 (16)0.18815 (13)0.55331 (13)0.0520 (4)
H131.27850.20870.58410.062*
C141.08659 (16)0.15870 (12)0.60685 (11)0.0433 (4)
C150.93939 (15)0.12611 (12)0.56797 (10)0.0375 (3)
H150.88020.10760.60520.045*
C160.88544 (14)0.12277 (11)0.46851 (9)0.0337 (3)
U11U22U33U12U13U23
O10.0816 (9)0.0892 (11)0.0650 (9)0.0071 (8)0.0377 (7)0.0152 (8)
O20.1124 (13)0.0726 (11)0.1501 (16)−0.0232 (10)0.0756 (12)0.0175 (10)
O30.0884 (10)0.1023 (12)0.0437 (7)0.0028 (9)0.0066 (7)−0.0094 (7)
O40.0647 (9)0.1077 (13)0.0874 (11)−0.0184 (8)−0.0262 (8)−0.0118 (9)
N10.0585 (9)0.0505 (9)0.0863 (12)0.0087 (7)0.0376 (8)0.0203 (8)
N20.0521 (8)0.0823 (11)0.0423 (8)0.0015 (8)0.0193 (6)0.0077 (7)
N30.0397 (6)0.0518 (8)0.0396 (7)−0.0015 (6)0.0139 (5)0.0034 (5)
N40.0345 (6)0.0445 (7)0.0350 (6)−0.0009 (5)0.0096 (5)0.0047 (5)
N50.0539 (8)0.0556 (8)0.0348 (7)0.0022 (6)0.0122 (5)0.0045 (6)
N60.0602 (9)0.0482 (9)0.0565 (9)−0.0003 (7)−0.0065 (7)−0.0092 (7)
C10.0448 (8)0.0398 (9)0.0594 (10)0.0049 (7)0.0195 (7)0.0067 (7)
C20.0607 (11)0.0428 (10)0.0824 (13)−0.0098 (8)0.0189 (9)−0.0067 (9)
C30.0704 (12)0.0604 (12)0.0614 (12)−0.0067 (9)0.0098 (9)−0.0233 (9)
C40.0484 (8)0.0589 (11)0.0403 (8)0.0030 (8)0.0096 (7)−0.0072 (7)
C50.0340 (7)0.0411 (8)0.0386 (7)0.0026 (6)0.0088 (6)0.0006 (6)
C60.0425 (8)0.0388 (8)0.0402 (8)0.0044 (6)0.0126 (6)0.0003 (6)
C70.0645 (11)0.0929 (15)0.0362 (9)0.0050 (10)0.0164 (8)−0.0053 (9)
C80.0307 (7)0.0476 (9)0.0490 (8)−0.0051 (6)0.0068 (6)0.0043 (7)
C90.0341 (7)0.0446 (9)0.0510 (9)−0.0058 (6)0.0095 (6)0.0098 (7)
C100.0589 (10)0.0556 (10)0.0445 (9)0.0084 (8)0.0272 (7)0.0085 (7)
C110.0410 (7)0.0369 (8)0.0481 (8)0.0058 (6)0.0221 (6)0.0066 (6)
C120.0387 (8)0.0456 (9)0.0772 (12)0.0017 (7)0.0300 (8)0.0100 (8)
C130.0307 (7)0.0395 (9)0.0805 (12)−0.0024 (6)0.0110 (7)0.0025 (8)
C140.0396 (7)0.0328 (8)0.0494 (9)0.0009 (6)0.0035 (6)−0.0035 (6)
C150.0376 (7)0.0354 (7)0.0399 (7)0.0015 (6)0.0132 (6)0.0017 (6)
C160.0304 (6)0.0311 (7)0.0397 (7)0.0020 (5)0.0117 (5)0.0027 (5)
O1—N11.223 (2)C4—C71.416 (3)
O2—N11.220 (2)C5—C61.391 (2)
O3—N61.216 (2)C6—H60.9300
O4—N61.221 (2)C7—H70.9300
N1—C11.474 (2)C8—C91.520 (2)
N2—C71.309 (3)C8—H8A0.9700
N2—N31.3603 (18)C8—H8B0.9700
N3—C51.3643 (19)C9—H9A0.9700
N3—C81.445 (2)C9—H9B0.9700
N4—N51.3581 (17)C10—C111.411 (2)
N4—C161.3650 (18)C10—H100.9300
N4—C91.4494 (19)C11—C121.402 (2)
N5—C101.316 (2)C11—C161.4082 (19)
N6—C141.472 (2)C12—C131.360 (2)
C1—C61.367 (2)C12—H120.9300
C1—C21.404 (2)C13—C141.401 (2)
C2—C31.361 (3)C13—H130.9300
C2—H20.9300C14—C151.373 (2)
C3—C41.400 (3)C15—C161.3929 (19)
C3—H30.9300C15—H150.9300
C4—C51.406 (2)
O2—N1—O1123.51 (18)C4—C7—H7123.8
O2—N1—C1118.09 (18)N3—C8—C9111.77 (12)
O1—N1—C1118.37 (15)N3—C8—H8A109.3
C7—N2—N3105.94 (14)C9—C8—H8A109.3
N2—N3—C5111.41 (13)N3—C8—H8B109.3
N2—N3—C8119.09 (13)C9—C8—H8B109.3
C5—N3—C8128.28 (12)H8A—C8—H8B107.9
N5—N4—C16111.41 (11)N4—C9—C8111.39 (12)
N5—N4—C9118.85 (11)N4—C9—H9A109.3
C16—N4—C9129.58 (12)C8—C9—H9A109.3
C10—N5—N4106.31 (12)N4—C9—H9B109.3
O3—N6—O4123.09 (18)C8—C9—H9B109.3
O3—N6—C14118.95 (15)H9A—C9—H9B108.0
O4—N6—C14117.96 (18)N5—C10—C11111.71 (13)
C6—C1—C2124.04 (16)N5—C10—H10124.1
C6—C1—N1117.51 (15)C11—C10—H10124.1
C2—C1—N1118.44 (16)C12—C11—C16119.62 (14)
C3—C2—C1119.66 (17)C12—C11—C10136.07 (14)
C3—C2—H2120.2C16—C11—C10104.29 (13)
C1—C2—H2120.2C13—C12—C11118.78 (14)
C2—C3—C4118.92 (16)C13—C12—H12120.6
C2—C3—H3120.5C11—C12—H12120.6
C4—C3—H3120.5C12—C13—C14119.75 (14)
C3—C4—C5119.45 (16)C12—C13—H13120.1
C3—C4—C7136.90 (17)C14—C13—H13120.1
C5—C4—C7103.63 (16)C15—C14—C13124.32 (15)
N3—C5—C6130.81 (13)C15—C14—N6117.30 (15)
N3—C5—C4106.64 (13)C13—C14—N6118.38 (14)
C6—C5—C4122.54 (15)C14—C15—C16114.97 (13)
C1—C6—C5115.31 (14)C14—C15—H15122.5
C1—C6—H6122.3C16—C15—H15122.5
C5—C6—H6122.3N4—C16—C15131.16 (12)
N2—C7—C4112.36 (15)N4—C16—C11106.28 (12)
N2—C7—H7123.8C15—C16—C11122.54 (13)
C7—N2—N3—C51.38 (17)C5—N3—C8—C987.72 (18)
C7—N2—N3—C8169.77 (14)N5—N4—C9—C8−68.45 (17)
C16—N4—N5—C100.40 (17)C16—N4—C9—C8106.61 (16)
C9—N4—N5—C10176.31 (14)N3—C8—C9—N4−65.19 (17)
O2—N1—C1—C6−176.34 (16)N4—N5—C10—C11−0.10 (18)
O1—N1—C1—C65.4 (2)N5—C10—C11—C12177.90 (17)
O2—N1—C1—C25.0 (2)N5—C10—C11—C16−0.21 (18)
O1—N1—C1—C2−173.22 (15)C16—C11—C12—C130.6 (2)
C6—C1—C2—C3−2.2 (3)C10—C11—C12—C13−177.33 (17)
N1—C1—C2—C3176.39 (16)C11—C12—C13—C14−1.3 (2)
C1—C2—C3—C41.7 (3)C12—C13—C14—C150.8 (2)
C2—C3—C4—C50.6 (3)C12—C13—C14—N6179.97 (14)
C2—C3—C4—C7178.7 (2)O3—N6—C14—C15−7.5 (2)
N2—N3—C5—C6−179.39 (14)O4—N6—C14—C15172.00 (16)
C8—N3—C5—C613.6 (2)O3—N6—C14—C13173.18 (16)
N2—N3—C5—C4−0.72 (16)O4—N6—C14—C13−7.3 (2)
C8—N3—C5—C4−167.77 (13)C13—C14—C15—C160.6 (2)
C3—C4—C5—N3178.52 (15)N6—C14—C15—C16−178.62 (12)
C7—C4—C5—N3−0.18 (17)N5—N4—C16—C15−179.32 (14)
C3—C4—C5—C6−2.7 (2)C9—N4—C16—C155.3 (3)
C7—C4—C5—C6178.62 (14)N5—N4—C16—C11−0.53 (15)
C2—C1—C6—C50.2 (2)C9—N4—C16—C11−175.88 (14)
N1—C1—C6—C5−178.41 (12)C14—C15—C16—N4177.23 (14)
N3—C5—C6—C1−179.27 (14)C14—C15—C16—C11−1.4 (2)
C4—C5—C6—C12.2 (2)C12—C11—C16—N4−178.06 (13)
N3—N2—C7—C4−1.5 (2)C10—C11—C16—N40.43 (15)
C3—C4—C7—N2−177.3 (2)C12—C11—C16—C150.9 (2)
C5—C4—C7—N21.1 (2)C10—C11—C16—C15179.35 (13)
N2—N3—C8—C9−78.47 (16)
D—H···AD—HH···AD···AD—H···A
C7—H7···N5i0.932.483.344 (2)154
C15—H15···O1i0.932.473.401 (2)179
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C7—H7⋯N5i 0.932.483.344 (2)154
C15—H15⋯O1i 0.932.473.401 (2)179

Symmetry code: (i) .

  8 in total

1.  Identification of 3-sulfonylindazole derivatives as potent and selective 5-HT(6) antagonists.

Authors:  Kevin G Liu; Albert J Robichaud; Alexander A Greenfield; Jennifer R Lo; Cristina Grosanu; James F Mattes; Yanxuan Cai; Guo Ming Zhang; Jean Y Zhang; Dianne M Kowal; Deborah L Smith; Li Di; Edward H Kerns; Lee E Schechter; Thomas A Comery
Journal:  Bioorg Med Chem       Date:  2010-10-20       Impact factor: 3.641

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis of new α aminophosphonate system bearing Indazole moiety and their biological activity.

Authors:  Nasir ali Shafakat Ali; Shaikh Zakir; Muqtadir Patel; Mazahar Farooqui
Journal:  Eur J Med Chem       Date:  2012-01-30       Impact factor: 6.514

4.  Synthesis of 1-benzyl-3-(5'-hydroxymethyl-2'-furyl)indazole analogues as novel antiplatelet agents.

Authors:  F Y Lee; J C Lien; L J Huang; T M Huang; S C Tsai; C M Teng; C C Wu; F C Cheng; S C Kuo
Journal:  J Med Chem       Date:  2001-10-25       Impact factor: 7.446

5.  Synthesis, antiproliferative and apoptotic activities of N-(6(4)-indazolyl)-benzenesulfonamide derivatives as potential anticancer agents.

Authors:  Najat Abbassi; Hakima Chicha; El Mostapha Rakib; Abdellah Hannioui; Mdaghri Alaoui; Abdelouahed Hajjaji; Detlef Geffken; Cinzia Aiello; Rosaria Gangemi; Camillo Rosano; Maurizio Viale
Journal:  Eur J Med Chem       Date:  2012-09-17       Impact factor: 6.514

6.  2-Allyl-7-nitro-2H-indazole.

Authors:  Assoman Kouakou; El Mostapha Rakib; Domenico Spinelli; Mohamed Saadi; Lahcen El Ammari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-10-02

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

8.  1-Allyl-3-chloro-5-nitro-1H-indazole.

Authors:  Hakima Chicha; El Mostapha Rakib; Domenico Spinelli; Mohamed Saadi; Lahcen El Ammari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-08-10
  8 in total

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