Literature DB >> 24454056

2-Allyl-7-nitro-2H-indazole.

Assoman Kouakou1, El Mostapha Rakib1, Domenico Spinelli2, Mohamed Saadi3, Lahcen El Ammari3.   

Abstract

The asymmetric unit of the title compound, C10H9N3O2, contains two independent mol-ecules linked by a C-H⋯N hydrogen bond. Each mol-ecule has a similar conformation, being built up from fused five- and six-membered rings, each linked to an ally and nitro group, respectively. The indazole ring system makes dihedral angles of 2.7 (2) and 2.2 (2)°, respectively, with the plane through the nitro group. The allyl group is nearly perpendicular to the indazole system, as indicated by the N-N-C-C torsion angles of -75.3 (2) and -82.2 (2)°, this being the most important difference between the conformations of the two mol-ecules. In the crystal, mol-ecules are linked by C-H⋯O and π-π [inter-centroid distance = 3.6225 (8) Å] inter-actions to form a three-dimensional network.

Entities:  

Year:  2013        PMID: 24454056      PMCID: PMC3884280          DOI: 10.1107/S1600536813026743

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For pharmacological effects of indazole derivatives, see: Baraldi et al. (2001 ▶); Li et al. (2003 ▶); Lee et al. (2001 ▶); Rodgers et al. (1996 ▶); Schmidt et al. (2008 ▶). For similar compounds, see: El Brahmi et al. (2012 ▶); Chicha et al. (2013 ▶).

Experimental

Crystal data

C10H9N3O2 M = 203.20 Triclinic, a = 8.1848 (3) Å b = 8.3253 (4) Å c = 16.3194 (6) Å α = 84.168 (2)° β = 85.653 (2)° γ = 60.843 (2)° V = 965.64 (7) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.42 × 0.29 × 0.17 mm

Data collection

Bruker X8 APEX diffractometer 22310 measured reflections 4980 independent reflections 4107 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.142 S = 1.04 4980 reflections 271 parameters H-atom parameters constrained Δρmax = 0.37 e Å−3 Δρmin = −0.24 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536813026743/tk5258sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813026743/tk5258Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813026743/tk5258Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H9N3O2Z = 4
Mr = 203.20F(000) = 424
Triclinic, P1Dx = 1.398 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.1848 (3) ÅCell parameters from 4980 reflections
b = 8.3253 (4) Åθ = 2.5–28.7°
c = 16.3194 (6) ŵ = 0.10 mm1
α = 84.168 (2)°T = 296 K
β = 85.653 (2)°Irregular shape, colourless
γ = 60.843 (2)°0.42 × 0.29 × 0.17 mm
V = 965.64 (7) Å3
Bruker X8 APEX diffractometer4107 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.028
Graphite monochromatorθmax = 28.7°, θmin = 2.5°
φ and ω scansh = −11→11
22310 measured reflectionsk = −11→11
4980 independent reflectionsl = −22→22
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.142H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.076P)2 + 0.1973P] where P = (Fo2 + 2Fc2)/3
4980 reflections(Δ/σ)max = 0.001
271 parametersΔρmax = 0.37 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against all reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on all data will be even larger.
xyzUiso*/Ueq
C10.40636 (16)0.52858 (16)0.63233 (7)0.0352 (2)
C20.32039 (17)0.46916 (16)0.57894 (7)0.0365 (3)
C30.22059 (19)0.58263 (18)0.51389 (8)0.0439 (3)
H30.16560.54130.47950.053*
C40.1994 (2)0.76114 (19)0.49786 (9)0.0506 (3)
H40.12970.83630.45340.061*
C50.2794 (2)0.82492 (18)0.54647 (9)0.0491 (3)
H50.26590.94250.53540.059*
C60.38287 (18)0.71050 (17)0.61358 (8)0.0406 (3)
C70.4834 (2)0.7291 (2)0.67340 (9)0.0478 (3)
H70.49780.83140.67920.057*
C80.6739 (2)0.5268 (3)0.79150 (9)0.0568 (4)
H8A0.62890.47180.83660.068*
H8B0.66060.64040.80920.068*
C90.8763 (2)0.3989 (3)0.77569 (10)0.0595 (4)
H90.95680.38300.81680.071*
C100.9523 (3)0.3085 (3)0.71208 (12)0.0699 (5)
H10A0.87860.31910.66900.084*
H10B1.08120.23210.70890.084*
N10.51163 (16)0.44398 (16)0.69883 (7)0.0424 (3)
N20.55488 (16)0.57195 (17)0.72082 (7)0.0463 (3)
N30.33824 (17)0.28617 (16)0.59100 (8)0.0469 (3)
O10.2663 (3)0.24031 (19)0.54180 (9)0.0862 (5)
O20.42204 (19)0.18615 (16)0.65005 (8)0.0689 (3)
C110.77659 (16)0.77408 (16)0.98570 (7)0.0358 (3)
C120.71532 (16)0.68123 (16)1.04771 (7)0.0357 (3)
C130.64456 (19)0.75454 (19)1.12190 (8)0.0444 (3)
H130.60600.69151.16210.053*
C140.6294 (2)0.9241 (2)1.13810 (10)0.0543 (4)
H140.58040.97181.18880.065*
C150.6852 (2)1.0194 (2)1.08103 (10)0.0541 (4)
H150.67411.13171.09220.065*
C160.75989 (19)0.94553 (17)1.00491 (9)0.0437 (3)
C170.8334 (2)1.0005 (2)0.93490 (10)0.0543 (4)
H170.84411.10720.92650.065*
C180.9745 (2)0.8661 (3)0.80039 (10)0.0671 (5)
H18A1.07080.74050.79240.081*
H18B1.03480.94210.79800.081*
C190.8404 (2)0.9320 (2)0.73243 (10)0.0573 (4)
H190.73561.04800.73440.069*
C200.8612 (3)0.8364 (3)0.67013 (12)0.0725 (5)
H20A0.96470.71990.66650.087*
H20B0.77260.88480.62940.087*
N40.85309 (16)0.72904 (16)0.90988 (7)0.0434 (3)
N50.88521 (17)0.87130 (18)0.88237 (8)0.0505 (3)
N60.72571 (15)0.50676 (15)1.03441 (7)0.0415 (2)
O30.78980 (18)0.43963 (15)0.96842 (7)0.0602 (3)
O40.67488 (19)0.43012 (16)1.09090 (8)0.0691 (4)
U11U22U33U12U13U23
C10.0349 (5)0.0344 (5)0.0368 (6)−0.0177 (5)0.0018 (4)−0.0023 (4)
C20.0381 (6)0.0340 (5)0.0391 (6)−0.0191 (5)0.0006 (5)−0.0028 (5)
C30.0472 (7)0.0438 (7)0.0408 (6)−0.0213 (6)−0.0050 (5)−0.0044 (5)
C40.0571 (8)0.0405 (7)0.0450 (7)−0.0172 (6)−0.0076 (6)0.0049 (5)
C50.0575 (8)0.0323 (6)0.0537 (8)−0.0198 (6)0.0006 (6)0.0000 (5)
C60.0429 (6)0.0349 (6)0.0467 (7)−0.0207 (5)0.0035 (5)−0.0073 (5)
C70.0499 (7)0.0449 (7)0.0560 (8)−0.0275 (6)0.0010 (6)−0.0124 (6)
C80.0510 (8)0.0786 (10)0.0469 (8)−0.0337 (8)−0.0057 (6)−0.0141 (7)
C90.0516 (8)0.0773 (11)0.0546 (9)−0.0345 (8)−0.0082 (7)−0.0023 (8)
C100.0568 (9)0.0864 (13)0.0607 (10)−0.0308 (9)−0.0006 (8)−0.0034 (9)
N10.0444 (6)0.0458 (6)0.0413 (6)−0.0250 (5)−0.0048 (4)−0.0006 (5)
N20.0453 (6)0.0548 (7)0.0453 (6)−0.0280 (5)−0.0021 (5)−0.0107 (5)
N30.0516 (6)0.0404 (6)0.0563 (7)−0.0284 (5)−0.0044 (5)−0.0006 (5)
O10.1353 (13)0.0694 (8)0.0879 (9)−0.0731 (9)−0.0361 (9)0.0031 (7)
O20.0785 (8)0.0473 (6)0.0881 (9)−0.0373 (6)−0.0305 (7)0.0222 (6)
C110.0350 (5)0.0359 (6)0.0385 (6)−0.0185 (5)−0.0107 (4)0.0035 (5)
C120.0354 (6)0.0328 (5)0.0394 (6)−0.0171 (5)−0.0079 (5)0.0029 (4)
C130.0454 (7)0.0467 (7)0.0396 (6)−0.0214 (6)−0.0047 (5)0.0012 (5)
C140.0592 (8)0.0515 (8)0.0484 (8)−0.0214 (7)−0.0056 (6)−0.0131 (6)
C150.0601 (9)0.0393 (7)0.0652 (9)−0.0229 (6)−0.0165 (7)−0.0084 (6)
C160.0457 (7)0.0371 (6)0.0532 (7)−0.0236 (5)−0.0165 (6)0.0061 (5)
C170.0574 (8)0.0509 (8)0.0655 (9)−0.0363 (7)−0.0199 (7)0.0172 (7)
C180.0548 (9)0.0939 (13)0.0546 (9)−0.0423 (9)−0.0056 (7)0.0238 (9)
C190.0529 (8)0.0657 (9)0.0513 (8)−0.0303 (7)−0.0036 (6)0.0144 (7)
C200.0687 (11)0.0900 (13)0.0579 (10)−0.0402 (10)0.0091 (8)0.0004 (9)
N40.0441 (6)0.0490 (6)0.0400 (5)−0.0257 (5)−0.0059 (4)0.0048 (5)
N50.0500 (6)0.0615 (7)0.0476 (6)−0.0354 (6)−0.0112 (5)0.0162 (5)
N60.0421 (5)0.0377 (5)0.0482 (6)−0.0223 (5)−0.0070 (5)0.0026 (4)
O30.0892 (8)0.0508 (6)0.0500 (6)−0.0399 (6)−0.0076 (5)−0.0067 (5)
O40.0824 (8)0.0530 (6)0.0815 (8)−0.0439 (6)0.0186 (7)0.0003 (6)
C1—N11.3459 (17)C11—N41.3459 (16)
C1—C21.4208 (17)C11—C121.4196 (17)
C1—C61.4337 (17)C11—C161.4313 (17)
C2—C31.3648 (18)C12—C131.3686 (18)
C2—N31.4517 (16)C12—N61.4509 (16)
C3—C41.409 (2)C13—C141.407 (2)
C3—H30.9300C13—H130.9300
C4—C51.358 (2)C14—C151.358 (2)
C4—H40.9300C14—H140.9300
C5—C61.402 (2)C15—C161.403 (2)
C5—H50.9300C15—H150.9300
C6—C71.389 (2)C16—C171.391 (2)
C7—N21.330 (2)C17—N51.326 (2)
C7—H70.9300C17—H170.9300
C8—N21.4649 (19)C18—N51.469 (2)
C8—C91.489 (2)C18—C191.486 (2)
C8—H8A0.9700C18—H18A0.9700
C8—H8B0.9700C18—H18B0.9700
C9—C101.279 (2)C19—C201.304 (3)
C9—H90.9300C19—H190.9300
C10—H10A0.9300C20—H20A0.9300
C10—H10B0.9300C20—H20B0.9300
N1—N21.3615 (16)N4—N51.3605 (16)
N3—O21.2137 (16)N6—O31.2240 (15)
N3—O11.2207 (17)N6—O41.2292 (15)
N1—C1—C2131.9 (2)N4—C11—C12131.5 (2)
N1—C1—C6111.6 (2)N4—C11—C16111.7 (2)
C2—C1—C6116.5 (2)C12—C11—C16116.8 (2)
C3—C2—C1120.6 (2)C13—C12—C11120.6 (2)
C3—C2—N3118.2 (2)C13—C12—N6118.2 (2)
C1—C2—N3121.3 (2)C11—C12—N6121.2 (2)
C2—C3—C4121.2 (2)C12—C13—C14120.8 (2)
C2—C3—H3119.4C12—C13—H13119.6
C4—C3—H3119.4C14—C13—H13119.6
C5—C4—C3120.8 (2)C15—C14—C13121.2 (2)
C5—C4—H4119.6C15—C14—H14119.4
C3—C4—H4119.6C13—C14—H14119.4
C4—C5—C6118.9 (2)C14—C15—C16118.8 (2)
C4—C5—H5120.6C14—C15—H15120.6
C6—C5—H5120.6C16—C15—H15120.6
C7—C6—C5134.0 (2)C17—C16—C15134.4 (2)
C7—C6—C1104.0 (2)C17—C16—C11103.8 (2)
C5—C6—C1121.9 (2)C15—C16—C11121.8 (2)
N2—C7—C6106.6 (2)N5—C17—C16106.7 (2)
N2—C7—H7126.7N5—C17—H17126.6
C6—C7—H7126.7C16—C17—H17126.6
N2—C8—C9114.9 (2)N5—C18—C19113.1 (2)
N2—C8—H8A108.5N5—C18—H18A109.0
C9—C8—H8A108.5C19—C18—H18A109.0
N2—C8—H8B108.5N5—C18—H18B109.0
C9—C8—H8B108.5C19—C18—H18B109.0
H8A—C8—H8B107.5H18A—C18—H18B107.8
C10—C9—C8127.5 (2)C20—C19—C18123.8 (2)
C10—C9—H9116.3C20—C19—H19118.1
C8—C9—H9116.3C18—C19—H19118.1
C9—C10—H10A120.0C19—C20—H20A120.0
C9—C10—H10B120.0C19—C20—H20B120.0
H10A—C10—H10B120.0H20A—C20—H20B120.0
C1—N1—N2103.1 (2)C11—N4—N5103.0 (2)
C7—N2—N1114.7 (2)C17—N5—N4114.8 (2)
C7—N2—C8126.3 (2)C17—N5—C18126.9 (2)
N1—N2—C8119.0 (2)N4—N5—C18118.3 (2)
O2—N3—O1122.8 (2)O3—N6—O4122.8 (2)
O2—N3—C2118.7 (2)O3—N6—C12118.6 (2)
O1—N3—C2118.5 (2)O4—N6—C12118.5 (2)
D—H···AD—HH···AD···AD—H···A
C10—H10A···N20.932.602.907 (3)100
C5—H5···O1i0.932.493.4004 (19)165
C8—H8A···O4ii0.972.453.205 (2)134
C15—H15···O4i0.932.493.3986 (19)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C10—H10A⋯N20.932.602.907 (3)100
C5—H5⋯O1i 0.932.493.4004 (19)165
C8—H8A⋯O4ii 0.972.453.205 (2)134
C15—H15⋯O4i 0.932.493.3986 (19)167

Symmetry codes: (i) ; (ii) .

  7 in total

1.  Structure-based design, synthesis, and antimicrobial activity of indazole-derived SAH/MTA nucleosidase inhibitors.

Authors:  Xiaoming Li; Sam Chu; Victoria A Feher; Mitra Khalili; Zhe Nie; Stephen Margosiak; Victor Nikulin; James Levin; Kelly G Sprankle; Martina E Tedder; Robert Almassy; Krzysztof Appelt; Kraig M Yager
Journal:  J Med Chem       Date:  2003-12-18       Impact factor: 7.446

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Design, synthesis, DNA binding, and biological evaluation of water-soluble hybrid molecules containing two pyrazole analogues of the alkylating cyclopropylpyrroloindole (CPI) subunit of the antitumor agent CC-1065 and polypyrrole minor groove binders.

Authors:  P G Baraldi; G Balboni; M G Pavani; G Spalluto; M A Tabrizi; E D Clercq; J Balzarini; T Bando; H Sugiyama; R Romagnoli
Journal:  J Med Chem       Date:  2001-08-02       Impact factor: 7.446

4.  Synthesis of 1-benzyl-3-(5'-hydroxymethyl-2'-furyl)indazole analogues as novel antiplatelet agents.

Authors:  F Y Lee; J C Lien; L J Huang; T M Huang; S C Tsai; C M Teng; C C Wu; F C Cheng; S C Kuo
Journal:  J Med Chem       Date:  2001-10-25       Impact factor: 7.446

5.  1-Allyl-6-nitro-1H-indazole.

Authors:  Nabil El Brahmi; Mohammed Benchidmi; El Mokhtar Essassi; Sonia Ladeira; Lahcen El Ammari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-17

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

7.  1-Allyl-3-chloro-5-nitro-1H-indazole.

Authors:  Hakima Chicha; El Mostapha Rakib; Domenico Spinelli; Mohamed Saadi; Lahcen El Ammari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-08-10
  7 in total
  1 in total

1.  6,6'-Di-nitro-1,1'-(ethane-1,2-di-yl)di(1H-indazole).

Authors:  Assoman Kouakou; El Mostapha Rakib; Abdelghani El Malki; Mohamed Saadi; Lahcen El Ammari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-03-05
  1 in total

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