Literature DB >> 24821515

Environmental DNA for wildlife biology and biodiversity monitoring.

Kristine Bohmann1, Alice Evans2, M Thomas P Gilbert3, Gary R Carvalho2, Simon Creer2, Michael Knapp2, Douglas W Yu4, Mark de Bruyn5.   

Abstract

Extraction and identification of DNA from an environmental sample has proven noteworthy recently in detecting and monitoring not only common species, but also those that are endangered, invasive, or elusive. Particular attributes of so-called environmental DNA (eDNA) analysis render it a potent tool for elucidating mechanistic insights in ecological and evolutionary processes. Foremost among these is an improved ability to explore ecosystem-level processes, the generation of quantitative indices for analyses of species, community diversity, and dynamics, and novel opportunities through the use of time-serial samples and unprecedented sensitivity for detecting rare or difficult-to-sample taxa. Although technical challenges remain, here we examine the current frontiers of eDNA, outline key aspects requiring improvement, and suggest future developments and innovations for research.
Copyright © 2014 Elsevier Ltd. All rights reserved.

Keywords:  biodiversity; environmental DNA; metabarcoding; metagenomics; monitoring; second-generation sequencing; wildlife

Mesh:

Substances:

Year:  2014        PMID: 24821515     DOI: 10.1016/j.tree.2014.04.003

Source DB:  PubMed          Journal:  Trends Ecol Evol        ISSN: 0169-5347            Impact factor:   17.712


  143 in total

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2.  How are species interactions structured in species-rich communities? A new method for analysing time-series data.

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3.  Environmental DNA for improved detection and environmental surveillance of schistosomiasis.

Authors:  Mita E Sengupta; Micaela Hellström; Henry C Kariuki; Annette Olsen; Philip F Thomsen; Helena Mejer; Eske Willerslev; Mariam T Mwanje; Henry Madsen; Thomas K Kristensen; Anna-Sofie Stensgaard; Birgitte J Vennervald
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-11       Impact factor: 11.205

Review 4.  Next-Generation Sequencing and Its Impacts on Entomological Research in Ecology and Evolution.

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Journal:  Neotrop Entomol       Date:  2021-08-10       Impact factor: 1.434

Review 5.  Epigenetic biomarkers: Current strategies and future challenges for their use in the clinical laboratory.

Authors:  José Luis García-Giménez; Marta Seco-Cervera; Trygve O Tollefsbol; Carlos Romá-Mateo; Lorena Peiró-Chova; Pablo Lapunzina; Federico V Pallardó
Journal:  Crit Rev Clin Lab Sci       Date:  2017-12-11       Impact factor: 6.250

Review 6.  Targeted capture in evolutionary and ecological genomics.

Authors:  Matthew R Jones; Jeffrey M Good
Journal:  Mol Ecol       Date:  2015-07-30       Impact factor: 6.185

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Authors:  Mark A Goddard; Zoe G Davies; Solène Guenat; Mark J Ferguson; Jessica C Fisher; Adeniran Akanni; Teija Ahjokoski; Pippin M L Anderson; Fabio Angeoletto; Constantinos Antoniou; Adam J Bates; Andrew Barkwith; Adam Berland; Christopher J Bouch; Christine C Rega-Brodsky; Loren B Byrne; David Cameron; Rory Canavan; Tim Chapman; Stuart Connop; Steve Crossland; Marie C Dade; David A Dawson; Cynnamon Dobbs; Colleen T Downs; Erle C Ellis; Francisco J Escobedo; Paul Gobster; Natalie Marie Gulsrud; Burak Guneralp; Amy K Hahs; James D Hale; Christopher Hassall; Marcus Hedblom; Dieter F Hochuli; Tommi Inkinen; Ioan-Cristian Ioja; Dave Kendal; Tom Knowland; Ingo Kowarik; Simon J Langdale; Susannah B Lerman; Ian MacGregor-Fors; Peter Manning; Peter Massini; Stacey McLean; David D Mkwambisi; Alessandro Ossola; Gabriel Pérez Luque; Luis Pérez-Urrestarazu; Katia Perini; Gad Perry; Tristan J Pett; Kate E Plummer; Raoufou A Radji; Uri Roll; Simon G Potts; Heather Rumble; Jon P Sadler; Stevienna de Saille; Sebastian Sautter; Catherine E Scott; Assaf Shwartz; Tracy Smith; Robbert P H Snep; Carl D Soulsbury; Margaret C Stanley; Tim Van de Voorde; Stephen J Venn; Philip H Warren; Carla-Leanne Washbourne; Mark Whitling; Nicholas S G Williams; Jun Yang; Kumelachew Yeshitela; Ken P Yocom; Martin Dallimer
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8.  GRASP: guided reference-based assembly of short peptides.

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9.  Development and application of an eDNA method to detect and quantify a pathogenic parasite in aquatic ecosystems.

Authors:  J R Huver; J Koprivnikar; P T J Johnson; S Whyard
Journal:  Ecol Appl       Date:  2015-06       Impact factor: 4.657

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Authors:  Alfred Burian; Jens M Nielsen; Thomas Hansen; Rafael Bermudez; Monika Winder
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