Literature DB >> 24817811

A brain MRI atlas of the common squirrel monkey, Saimiri sciureus.

Yurui Gao1, Shweta P Khare2, Swetasudha Panda3, Ann S Choe1, Iwona Stepniewska4, Xia Li5, Zhoahua Ding6, Adam Anderson1, Bennett A Landman7.   

Abstract

The common squirrel monkey, Saimiri sciureus, is a New World monkey with functional and microstructural organization of central nervous system similar to that of humans. It is one of the most commonly used South American primates in biomedical research. Unlike its Old World macaque cousins, no digital atlases have described the organization of the squirrel monkey brain. Here, we present a multi-modal magnetic resonance imaging (MRI) atlas constructed from the brain of an adult female squirrel monkey. In vivo MRI acquisitions include T2 structural imaging and diffusion tensor imaging. Ex vivo MRI acquisitions include T2 structural imaging and diffusion tensor imaging. Cortical regions were manually annotated on the co-registered volumes based on published histological sections.

Entities:  

Keywords:  atlas; diffusion tensor imaging; magnetic resonance imaging; primate neuroanatomy

Year:  2014        PMID: 24817811      PMCID: PMC4013108          DOI: 10.1117/12.2043589

Source DB:  PubMed          Journal:  Proc SPIE Int Soc Opt Eng        ISSN: 0277-786X


  3 in total

1.  Spatial transformations of diffusion tensor magnetic resonance images.

Authors:  D C Alexander; C Pierpaoli; P J Basser; J C Gee
Journal:  IEEE Trans Med Imaging       Date:  2001-11       Impact factor: 10.048

Review 2.  Advances in functional and structural MR image analysis and implementation as FSL.

Authors:  Stephen M Smith; Mark Jenkinson; Mark W Woolrich; Christian F Beckmann; Timothy E J Behrens; Heidi Johansen-Berg; Peter R Bannister; Marilena De Luca; Ivana Drobnjak; David E Flitney; Rami K Niazy; James Saunders; John Vickers; Yongyue Zhang; Nicola De Stefano; J Michael Brady; Paul M Matthews
Journal:  Neuroimage       Date:  2004       Impact factor: 6.556

3.  Architectonics, somatotopic organization, and ipsilateral cortical connections of the primary motor area (M1) of owl monkeys.

Authors:  I Stepniewska; T M Preuss; J H Kaas
Journal:  J Comp Neurol       Date:  1993-04-08       Impact factor: 3.215

  3 in total
  8 in total

1.  Anatomical accuracy of standard-practice tractography algorithms in the motor system - A histological validation in the squirrel monkey brain.

Authors:  Kurt G Schilling; Yurui Gao; Iwona Stepniewska; Vaibhav Janve; Bennett A Landman; Adam W Anderson
Journal:  Magn Reson Imaging       Date:  2018-09-10       Impact factor: 2.546

2.  Reproducibility and variation of diffusion measures in the squirrel monkey brain, in vivo and ex vivo.

Authors:  Kurt Schilling; Yurui Gao; Iwona Stepniewska; Ann S Choe; Bennett A Landman; Adam W Anderson
Journal:  Magn Reson Imaging       Date:  2016-08-29       Impact factor: 2.546

3.  Limits to anatomical accuracy of diffusion tractography using modern approaches.

Authors:  Kurt G Schilling; Vishwesh Nath; Colin Hansen; Prasanna Parvathaneni; Justin Blaber; Yurui Gao; Peter Neher; Dogu Baran Aydogan; Yonggang Shi; Mario Ocampo-Pineda; Simona Schiavi; Alessandro Daducci; Gabriel Girard; Muhamed Barakovic; Jonathan Rafael-Patino; David Romascano; Gaëtan Rensonnet; Marco Pizzolato; Alice Bates; Elda Fischi; Jean-Philippe Thiran; Erick J Canales-Rodríguez; Chao Huang; Hongtu Zhu; Liming Zhong; Ryan Cabeen; Arthur W Toga; Francois Rheault; Guillaume Theaud; Jean-Christophe Houde; Jasmeen Sidhu; Maxime Chamberland; Carl-Fredrik Westin; Tim B Dyrby; Ragini Verma; Yogesh Rathi; M Okan Irfanoglu; Cibu Thomas; Carlo Pierpaoli; Maxime Descoteaux; Adam W Anderson; Bennett A Landman
Journal:  Neuroimage       Date:  2018-10-11       Impact factor: 6.556

4.  The VALiDATe29 MRI Based Multi-Channel Atlas of the Squirrel Monkey Brain.

Authors:  Kurt G Schilling; Yurui Gao; Iwona Stepniewska; Tung-Lin Wu; Feng Wang; Bennett A Landman; John C Gore; Li Min Chen; Adam W Anderson
Journal:  Neuroinformatics       Date:  2017-10

5.  Integrating histology and MRI in the first digital brain of common squirrel monkey, Saimiri sciureus.

Authors:  Peizhen Sun; Prasanna Parvathaneni; Kurt G Schilling; Yurui Gao; Vaibhav Janve; Adam Anderson; Bennett A Landman
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2015-03-17

6.  A 3D high resolution ex vivo white matter atlas of the common squirrel monkey (Saimiri sciureus) based on diffusion tensor imaging.

Authors:  Yurui Gao; Prasanna Parvathaneni; Kurt G Schilling; Feng Wang; Iwona Stepniewska; Zhoubing Xu; Ann S Choe; Zhaohua Ding; John C Gore; Li Min Chen; Bennett A Landman; Adam W Anderson
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2016-03-21

7.  Effects of long-term cocaine self-administration on brain resting-state functional connectivity in nonhuman primates.

Authors:  Stephen J Kohut; Dionyssios Mintzopoulos; Brian D Kangas; Hannah Shields; Kelly Brown; Timothy E Gillis; Michael L Rohan; Jack Bergman; Marc J Kaufman
Journal:  Transl Psychiatry       Date:  2020-12-02       Impact factor: 6.222

8.  Development of an optogenetic toolkit for neural circuit dissection in squirrel monkeys.

Authors:  Daniel J O'Shea; Paul Kalanithi; Emily A Ferenczi; Brian Hsueh; Chandramouli Chandrasekaran; Werapong Goo; Ilka Diester; Charu Ramakrishnan; Matthew T Kaufman; Stephen I Ryu; Kristen W Yeom; Karl Deisseroth; Krishna V Shenoy
Journal:  Sci Rep       Date:  2018-04-30       Impact factor: 4.379

  8 in total

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