Literature DB >> 24817808

Shape-Constrained Multi-Atlas Segmentation of Spleen in CT.

Zhoubing Xu1, Bo Li2, Swetasudha Panda1, Andrew J Asman1, Kristen L Merkle3, Peter L Shanahan4, Richard G Abramson5, Bennett A Landman6.   

Abstract

Spleen segmentation on clinically acquired CT data is a challenging problem given the complicity and variability of abdominal anatomy. Multi-atlas segmentation is a potential method for robust estimation of spleen segmentations, but can be negatively impacted by registration errors. Although labeled atlases explicitly capture information related to feasible organ shapes, multi-atlas methods have largely used this information implicitly through registration. We propose to integrate a level set shape model into the traditional label fusion framework to create a shape-constrained multi-atlas segmentation framework. Briefly, we (1) adapt two alternative atlas-to-target registrations to obtain the loose bounds on the inner and outer boundaries of the spleen shape, (2) project the fusion estimate to registered shape models, and (3) convert the projected shape into shape priors. With the constraint of the shape prior, our proposed method offers a statistically significant improvement in spleen labeling accuracy with an increase in DSC by 0.06, a decrease in symmetric mean surface distance by 4.01 mm, and a decrease in symmetric Hausdorff surface distance by 23.21 mm when compared to a locally weighted vote (LWV) method.

Entities:  

Keywords:  PCA; implicit shape model; multi-atlas segmentation; spleen segmentation

Year:  2014        PMID: 24817808      PMCID: PMC4013111          DOI: 10.1117/12.2043079

Source DB:  PubMed          Journal:  Proc SPIE Int Soc Opt Eng        ISSN: 0277-786X


  5 in total

1.  A shape-based approach to the segmentation of medical imagery using level sets.

Authors:  Andy Tsai; Anthony Yezzi; William Wells; Clare Tempany; Dewey Tucker; Ayres Fan; W Eric Grimson; Alan Willsky
Journal:  IEEE Trans Med Imaging       Date:  2003-02       Impact factor: 10.048

2.  Simultaneous truth and performance level estimation (STAPLE): an algorithm for the validation of image segmentation.

Authors:  Simon K Warfield; Kelly H Zou; William M Wells
Journal:  IEEE Trans Med Imaging       Date:  2004-07       Impact factor: 10.048

3.  A generative model for image segmentation based on label fusion.

Authors:  Mert R Sabuncu; B T Thomas Yeo; Koen Van Leemput; Bruce Fischl; Polina Golland
Journal:  IEEE Trans Med Imaging       Date:  2010-06-17       Impact factor: 10.048

4.  Non-local STAPLE: an intensity-driven multi-atlas rater model.

Authors:  Andrew J Asman; Bennett A Landman
Journal:  Med Image Comput Comput Assist Interv       Date:  2012

5.  Automatic anatomical brain MRI segmentation combining label propagation and decision fusion.

Authors:  Rolf A Heckemann; Joseph V Hajnal; Paul Aljabar; Daniel Rueckert; Alexander Hammers
Journal:  Neuroimage       Date:  2006-07-24       Impact factor: 6.556

  5 in total
  8 in total

1.  Multi-Atlas Spleen Segmentation on CT Using Adaptive Context Learning.

Authors:  Jiaqi Liu; Yuankai Huo; Zhoubing Xu; Albert Assad; Richard G Abramson; Bennett A Landman
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2017-02-24

2.  Spleen Segmentation and Assessment in CT Images for Traumatic Abdominal Injuries.

Authors:  S M Reza Soroushmehr; Pavani Davuluri; Somayeh Molaei; Rosalyn Hobson Hargraves; Yang Tang; Charles H Cockrell; Kevin Ward; Kayvan Najarian
Journal:  J Med Syst       Date:  2015-07-25       Impact factor: 4.460

3.  Atlas-based algorithm for automatic anatomical measurements in the knee.

Authors:  Michael Brehler; Gaurav Thawait; Jonathan Kaplan; John Ramsay; Miho J Tanaka; Shadpour Demehri; Jeffrey H Siewerdsen; Wojciech Zbijewski
Journal:  J Med Imaging (Bellingham)       Date:  2019-06-19

4.  Abdomen and spinal cord segmentation with augmented active shape models.

Authors:  Zhoubing Xu; Benjamin N Conrad; Rebeccah B Baucom; Seth A Smith; Benjamin K Poulose; Bennett A Landman
Journal:  J Med Imaging (Bellingham)       Date:  2016-08-26

Review 5.  Multi-atlas segmentation of biomedical images: A survey.

Authors:  Juan Eugenio Iglesias; Mert R Sabuncu
Journal:  Med Image Anal       Date:  2015-07-06       Impact factor: 8.545

6.  Multi-atlas Segmentation Enables Robust Multi-contrast MRI Spleen Segmentation for Splenomegaly.

Authors:  Yuankai Huo; Jiaqi Liu; Zhoubing Xu; Robert L Harrigan; Albert Assad; Richard G Abramson; Bennett A Landman
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2017-02-24

7.  High-resolution 3D abdominal segmentation with random patch network fusion.

Authors:  Yucheng Tang; Riqiang Gao; Ho Hin Lee; Shizhong Han; Yunqiang Chen; Dashan Gao; Vishwesh Nath; Camilo Bermudez; Michael R Savona; Richard G Abramson; Shunxing Bao; Ilwoo Lyu; Yuankai Huo; Bennett A Landman
Journal:  Med Image Anal       Date:  2020-12-16       Impact factor: 13.828

8.  A Multiorgan Segmentation Model for CT Volumes via Full Convolution-Deconvolution Network.

Authors:  Yangzi Yang; Huiyan Jiang; Qingjiao Sun
Journal:  Biomed Res Int       Date:  2017-09-17       Impact factor: 3.411

  8 in total

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