Literature DB >> 24817735

Expression, purification, crystallization and preliminary X-ray diffraction analysis of the C-terminal NHL domain of human TRIM2.

Xiaotao Guan1, Jun Li1, Xingru Lü2, Yu Dong1, Weimin Chen3, Xuemei Li1.   

Abstract

The tripartite motif-containing protein 2 (TRIM2) functions as an E3 ubiquitin ligase. Loss of function of TRIM2 has been shown to result in early-onset axonal neuropathy. As a member of the TRIM-NHL family of proteins, TRIM2 has a conserved modular architecture that includes N-terminal RING finger and B-box domains, a middle coiled-coil domain and a C-terminal NHL domain. To characterize the functional role of its NHL domain from the perspective of structural biology, a truncation of human TRIM2 (residues 465-744) was expressed, purified and crystallized. Rod-shaped crystals were obtained that diffracted X-rays to 1.7 Å resolution. The crystals belonged to space group P21, with unit-cell parameters a = 43.6, b = 76.4, c = 107.4 Å, α = 90.0, β = 94.0, γ = 90.0°. A Matthews coefficient of 1.97 Å(3) Da(-1), corresponding to a solvent content of 37.6%, indicated the presence of three molecules per asymmetric unit, which was further confirmed by the phasing solution from molecular replacement.

Entities:  

Keywords:  NHL domain; TRIM2

Mesh:

Substances:

Year:  2014        PMID: 24817735      PMCID: PMC4014344          DOI: 10.1107/S2053230X14008127

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  13 in total

1.  RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination.

Authors:  K L Lorick; J P Jensen; S Fang; A M Ong; S Hatakeyama; A M Weissman
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-28       Impact factor: 11.205

2.  Structure of a c-Cbl-UbcH7 complex: RING domain function in ubiquitin-protein ligases.

Authors:  N Zheng; P Wang; P D Jeffrey; N P Pavletich
Journal:  Cell       Date:  2000-08-18       Impact factor: 41.582

3.  Deficiency in ubiquitin ligase TRIM2 causes accumulation of neurofilament light chain and neurodegeneration.

Authors:  Martin Balastik; Francesco Ferraguti; André Pires-da Silva; Tae Ho Lee; Gonzalo Alvarez-Bolado; Kun Ping Lu; Peter Gruss
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-07       Impact factor: 11.205

Review 4.  Structural specificity in coiled-coil interactions.

Authors:  Gevorg Grigoryan; Amy E Keating
Journal:  Curr Opin Struct Biol       Date:  2008-06-12       Impact factor: 6.809

5.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

6.  Identification of a novel Bcl-2-interacting mediator of cell death (Bim) E3 ligase, tripartite motif-containing protein 2 (TRIM2), and its role in rapid ischemic tolerance-induced neuroprotection.

Authors:  Simon Thompson; Andrea N Pearson; Michelle D Ashley; Veronica Jessick; Brona M Murphy; Philip Gafken; David C Henshall; Kate T Morris; Roger P Simon; Robert Meller
Journal:  J Biol Chem       Date:  2011-04-08       Impact factor: 5.157

7.  Deficiency of the E3 ubiquitin ligase TRIM2 in early-onset axonal neuropathy.

Authors:  Emil Ylikallio; Rosanna Pöyhönen; Magdalena Zimon; Els De Vriendt; Taru Hilander; Anders Paetau; Albena Jordanova; Tuula Lönnqvist; Henna Tyynismaa
Journal:  Hum Mol Genet       Date:  2013-04-04       Impact factor: 6.150

8.  Solution structure of the RBCC/TRIM B-box1 domain of human MID1: B-box with a RING.

Authors:  Michael A Massiah; Brandi N Simmons; Kieran M Short; Timothy C Cox
Journal:  J Mol Biol       Date:  2006-02-20       Impact factor: 5.469

9.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  1 in total

1.  Tripartite motif-containing 14 (TRIM14) promotes epithelial-mesenchymal transition via ZEB2 in glioblastoma cells.

Authors:  Shuang Feng; Xiaomin Cai; Yangyang Li; Xiaoguang Jian; Linxin Zhang; Bin Li
Journal:  J Exp Clin Cancer Res       Date:  2019-02-06
  1 in total

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