Literature DB >> 24817716

Crystallization and preliminary X-ray analysis of the cardiac transcription factor complex of NKX2.5 and TBX5 with DNA.

Lagnajeet Pradhan1, Sunil Gopal1, Hyun Joo Nam1.   

Abstract

Heart development depends on timely expression of genes regulated by combinatorial interactions of master cardiac transcription factors. To elucidate the molecular basis of their interactions, a ternary complex of cardiac transcription factors, NKX2.5 and TBX5, and their target DNA was studied using X-ray crystallography. Here, the purification, crystallization and preliminary X-ray crystallographic analyses of the NKX2.5 homeodomain and TBX5 DNA-binding domain complex with a DNA element from the -252 promoter region of the atrial natriuretic factor are reported. The crystal diffracted to 2.88 Å resolution and belonged to space group P21, with unit-cell parameters a = 69.30, b = 77.78, c = 77.60 Å, β = 108.31°. Two sets of ternary complexes are present in an asymmetric unit with a solvent content of 54%.

Entities:  

Keywords:  NKX2.5; TBX5; cardiac transcription factors; target DNA

Mesh:

Substances:

Year:  2014        PMID: 24817716      PMCID: PMC4014325          DOI: 10.1107/S2053230X14006761

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  12 in total

1.  Tbx5 associates with Nkx2-5 and synergistically promotes cardiomyocyte differentiation.

Authors:  Y Hiroi; S Kudoh; K Monzen; Y Ikeda; Y Yazaki; R Nagai; I Komuro
Journal:  Nat Genet       Date:  2001-07       Impact factor: 38.330

2.  Structural basis of TBX5-DNA recognition: the T-box domain in its DNA-bound and -unbound form.

Authors:  Christian U Stirnimann; Denis Ptchelkine; Clemens Grimm; Christoph W Müller
Journal:  J Mol Biol       Date:  2010-05-05       Impact factor: 5.469

Review 3.  Gene regulatory networks in the evolution and development of the heart.

Authors:  Eric N Olson
Journal:  Science       Date:  2006-09-29       Impact factor: 47.728

4.  Combinatorial interactions regulating cardiac transcription.

Authors:  D Durocher; M Nemer
Journal:  Dev Genet       Date:  1998

5.  Csx/Nkx2-5 is required for homeostasis and survival of cardiac myocytes in the adult heart.

Authors:  Haruhiro Toko; Weidong Zhu; Eiki Takimoto; Ichiro Shiojima; Yukio Hiroi; Yunzeng Zou; Toru Oka; Hiroshi Akazawa; Miho Mizukami; Masaya Sakamoto; Fumio Terasaki; Yasushi Kitaura; Hiroyuki Takano; Toshio Nagai; Ryozo Nagai; Issei Komuro
Journal:  J Biol Chem       Date:  2002-03-11       Impact factor: 5.157

6.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

Review 7.  Incidence of congenital heart disease: II. Prenatal incidence.

Authors:  J I Hoffman
Journal:  Pediatr Cardiol       Date:  1995 Jul-Aug       Impact factor: 1.655

8.  Crystallization and preliminary X-ray analysis of the NKX2.5 homeodomain in complex with DNA.

Authors:  Caroli Genis; Peyton Scone; Hideko Kasahara; Hyun Joo Nam
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-10-31

9.  Crystal structure of the human NKX2.5 homeodomain in complex with DNA target.

Authors:  Lagnajeet Pradhan; Caroli Genis; Peyton Scone; Ellen O Weinberg; Hideko Kasahara; Hyun-Joo Nam
Journal:  Biochemistry       Date:  2012-08-03       Impact factor: 3.162

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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