Literature DB >> 18997347

Crystallization and preliminary X-ray analysis of the NKX2.5 homeodomain in complex with DNA.

Caroli Genis1, Peyton Scone, Hideko Kasahara, Hyun Joo Nam.   

Abstract

As part of an effort to elucidate the molecular basis for the pathogenesis of NKX2.5 mutations in congenital heart disease using X-ray crystallography, the NKX2.5 homeodomain has been crystallized in complex with a specific DNA element, the -242 promoter region of atrial natriuretic factor. Crystals of the homeodomain-DNA complex diffracted X-rays to 1.7 A resolution and belonged to space group P6(5), with unit-cell parameters a = b = 71.5, c = 94.3 A. The asymmetric unit contained two molecules of the NKX2.5 homeodomain and one double-stranded oligonucleotide.

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Year:  2008        PMID: 18997347      PMCID: PMC2581709          DOI: 10.1107/S1744309108033447

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  20 in total

Review 1.  Homeodomain factor Nkx2-5 in heart development and disease.

Authors:  R P Harvey; D Lai; D Elliott; C Biben; M Solloway; O Prall; F Stennard; A Schindeler; N Groves; L Lavulo; C Hyun; T Yeoh; M Costa; M Furtado; E Kirk
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2002

2.  Cardiac-specific Nkx2.5 homeodomain: conformational stability and specific DNA binding of Nkx2.5(C56S).

Authors:  Elfrieda Fodor; James W Mack; Jin-Soo Maeng; Jeong-Ho Ju; Hyun Sook Lee; James M Gruschus; James A Ferretti; Ann Ginsburg
Journal:  Biochemistry       Date:  2005-09-20       Impact factor: 3.162

3.  Detecting and overcoming crystal twinning.

Authors:  T O Yeates
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

4.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

5.  Mutations in the cardiac transcription factor NKX2.5 affect diverse cardiac developmental pathways.

Authors:  D W Benson; G M Silberbach; A Kavanaugh-McHugh; C Cottrill; Y Zhang; S Riggs; O Smalls; M C Johnson; M S Watson; J G Seidman; C E Seidman; J Plowden; J D Kugler
Journal:  J Clin Invest       Date:  1999-12       Impact factor: 14.808

6.  The three-dimensional structure of the vnd/NK-2 homeodomain-DNA complex by NMR spectroscopy.

Authors:  J M Gruschus; D H Tsao; L H Wang; M Nirenberg; J A Ferretti
Journal:  J Mol Biol       Date:  1999-06-11       Impact factor: 5.469

Review 7.  Incidence of congenital heart disease: II. Prenatal incidence.

Authors:  J I Hoffman
Journal:  Pediatr Cardiol       Date:  1995 Jul-Aug       Impact factor: 1.655

8.  GATA4 mutations cause human congenital heart defects and reveal an interaction with TBX5.

Authors:  Vidu Garg; Irfan S Kathiriya; Robert Barnes; Marie K Schluterman; Isabelle N King; Cheryl A Butler; Caryn R Rothrock; Reenu S Eapen; Kayoko Hirayama-Yamada; Kunitaka Joo; Rumiko Matsuoka; Jonathan C Cohen; Deepak Srivastava
Journal:  Nature       Date:  2003-07-06       Impact factor: 49.962

9.  Biochemical analyses of eight NKX2.5 homeodomain missense mutations causing atrioventricular block and cardiac anomalies.

Authors:  Hideko Kasahara; D Woodrow Benson
Journal:  Cardiovasc Res       Date:  2004-10-01       Impact factor: 10.787

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  3 in total

1.  Crystallization and preliminary X-ray analysis of the cardiac transcription factor complex of NKX2.5 and TBX5 with DNA.

Authors:  Lagnajeet Pradhan; Sunil Gopal; Hyun Joo Nam
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-04-15       Impact factor: 1.056

Review 2.  Karyopherins in nuclear transport of homeodomain proteins during development.

Authors:  Wenduo Ye; Wenbo Lin; Alan M Tartakoff; Tao Tao
Journal:  Biochim Biophys Acta       Date:  2011-01-20

3.  Crystal structure of the human NKX2.5 homeodomain in complex with DNA target.

Authors:  Lagnajeet Pradhan; Caroli Genis; Peyton Scone; Ellen O Weinberg; Hideko Kasahara; Hyun-Joo Nam
Journal:  Biochemistry       Date:  2012-08-03       Impact factor: 3.162

  3 in total

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