Literature DB >> 24816891

LONGITUDINAL INTENSITY NORMALIZATION IN THE PRESENCE OF MULTIPLE SCLEROSIS LESIONS.

Snehashis Roy1, Aaron Carass1, Navid Shiee2, Dzung L Pham2, Peter Calabresi3, Daniel Reich4, Jerry L Prince1.   

Abstract

This paper proposes a longitudinal intensity normalization algorithm for T1-weighted magnetic resonance images of human brains in the presence of multiple sclerosis lesions, aiming towards stable and consistent longitudinal segmentations. Unlike previous longitudinal segmentation methods, we propose a 4D intensity normalization that can be used as a preprocessing step to any segmentation method. The variability in intensities arising from the relapsing and remitting nature of the multiple sclerosis lesions is modeled into an otherwise smooth intensity transform based on first order autoregressive models, resulting in smooth changes in segmentation statistics of normal tissues, while keeping the lesion information unaffected. We validated our method on both simulated and real longitudinal normal subjects and on multiple sclerosis subjects.

Entities:  

Keywords:  MRI; brain; intensity normalization; intensity standardization; segmentation

Year:  2013        PMID: 24816891      PMCID: PMC4013288          DOI: 10.1109/ISBI.2013.6556791

Source DB:  PubMed          Journal:  Proc IEEE Int Symp Biomed Imaging        ISSN: 1945-7928


  9 in total

1.  On standardizing the MR image intensity scale.

Authors:  L G Nyúl; J K Udupa
Journal:  Magn Reson Med       Date:  1999-12       Impact factor: 4.668

2.  CLASSIC: consistent longitudinal alignment and segmentation for serial image computing.

Authors:  Zhong Xue; Dinggang Shen; Christos Davatzikos
Journal:  Neuroimage       Date:  2005-11-04       Impact factor: 6.556

3.  Topology-preserving tissue classification of magnetic resonance brain images.

Authors:  Pierre-Louis Bazin; Dzung L Pham
Journal:  IEEE Trans Med Imaging       Date:  2007-04       Impact factor: 10.048

4.  Simulation of tissue atrophy using a topology preserving transformation model.

Authors:  Bilge Karaçali; Christos Davatzikos
Journal:  IEEE Trans Med Imaging       Date:  2006-05       Impact factor: 10.048

5.  MRI of the corpus callosum in multiple sclerosis: association with disability.

Authors:  A Ozturk; S A Smith; E M Gordon-Lipkin; D M Harrison; N Shiee; D L Pham; B S Caffo; P A Calabresi; D S Reich
Journal:  Mult Scler       Date:  2010-02       Impact factor: 6.312

6.  One-year age changes in MRI brain volumes in older adults.

Authors:  S M Resnick; A F Goldszal; C Davatzikos; S Golski; M A Kraut; E J Metter; R N Bryan; A B Zonderman
Journal:  Cereb Cortex       Date:  2000-05       Impact factor: 5.357

7.  Gray matter atrophy in multiple sclerosis: a longitudinal study.

Authors:  Elizabeth Fisher; Jar-Chi Lee; Kunio Nakamura; Richard A Rudick
Journal:  Ann Neurol       Date:  2008-09       Impact factor: 10.422

8.  A topology-preserving approach to the segmentation of brain images with multiple sclerosis lesions.

Authors:  Navid Shiee; Pierre-Louis Bazin; Arzu Ozturk; Daniel S Reich; Peter A Calabresi; Dzung L Pham
Journal:  Neuroimage       Date:  2009-09-17       Impact factor: 6.556

9.  4D multi-modality tissue segmentation of serial infant images.

Authors:  Li Wang; Feng Shi; Pew-Thian Yap; John H Gilmore; Weili Lin; Dinggang Shen
Journal:  PLoS One       Date:  2012-09-25       Impact factor: 3.240

  9 in total
  4 in total

1.  A Generative Probabilistic Model and Discriminative Extensions for Brain Lesion Segmentation--With Application to Tumor and Stroke.

Authors:  Bjoern H Menze; Koen Van Leemput; Danial Lashkari; Tammy Riklin-Raviv; Ezequiel Geremia; Esther Alberts; Philipp Gruber; Susanne Wegener; Marc-Andre Weber; Gabor Szekely; Nicholas Ayache; Polina Golland
Journal:  IEEE Trans Med Imaging       Date:  2015-11-20       Impact factor: 10.048

2.  Robust skull stripping using multiple MR image contrasts insensitive to pathology.

Authors:  Snehashis Roy; John A Butman; Dzung L Pham
Journal:  Neuroimage       Date:  2016-11-15       Impact factor: 6.556

Review 3.  The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS).

Authors:  Bjoern H Menze; Andras Jakab; Stefan Bauer; Jayashree Kalpathy-Cramer; Keyvan Farahani; Justin Kirby; Yuliya Burren; Nicole Porz; Johannes Slotboom; Roland Wiest; Levente Lanczi; Elizabeth Gerstner; Marc-André Weber; Tal Arbel; Brian B Avants; Nicholas Ayache; Patricia Buendia; D Louis Collins; Nicolas Cordier; Jason J Corso; Antonio Criminisi; Tilak Das; Hervé Delingette; Çağatay Demiralp; Christopher R Durst; Michel Dojat; Senan Doyle; Joana Festa; Florence Forbes; Ezequiel Geremia; Ben Glocker; Polina Golland; Xiaotao Guo; Andac Hamamci; Khan M Iftekharuddin; Raj Jena; Nigel M John; Ender Konukoglu; Danial Lashkari; José Antonió Mariz; Raphael Meier; Sérgio Pereira; Doina Precup; Stephen J Price; Tammy Riklin Raviv; Syed M S Reza; Michael Ryan; Duygu Sarikaya; Lawrence Schwartz; Hoo-Chang Shin; Jamie Shotton; Carlos A Silva; Nuno Sousa; Nagesh K Subbanna; Gabor Szekely; Thomas J Taylor; Owen M Thomas; Nicholas J Tustison; Gozde Unal; Flor Vasseur; Max Wintermark; Dong Hye Ye; Liang Zhao; Binsheng Zhao; Darko Zikic; Marcel Prastawa; Mauricio Reyes; Koen Van Leemput
Journal:  IEEE Trans Med Imaging       Date:  2014-12-04       Impact factor: 10.048

4.  Temporal filtering of longitudinal brain magnetic resonance images for consistent segmentation.

Authors:  Snehashis Roy; Aaron Carass; Jennifer Pacheco; Murat Bilgel; Susan M Resnick; Jerry L Prince; Dzung L Pham
Journal:  Neuroimage Clin       Date:  2016-02-16       Impact factor: 4.881

  4 in total

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