Literature DB >> 24816568

Narrowing the gap between the promise and reality of polyketide synthases as a synthetic biology platform.

Sean Poust1, Andrew Hagen2, Leonard Katz3, Jay D Keasling4.   

Abstract

Engineering modular polyketide synthases (PKSs) has the potential to be an effective methodology to produce existing and novel chemicals. However, this potential has only just begun to be realized. We propose the adoption of an iterative design-build-test-learn paradigm to improve PKS engineering. We suggest methods to improve engineered PKS design by learning from laboratory-based selection; adoption of DNA design software and automation to build constructs and libraries more easily; tools for the expression of engineered proteins in a variety of heterologous hosts; and mass spectrometry-based high-throughput screening methods. Finally, lessons learned during iterations of the design-build-test-learn cycle can serve as a knowledge base for the development of a single retrosynthesis algorithm usable by both PKS experts and non-experts alike.
Copyright © 2014. Published by Elsevier Ltd.

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Year:  2014        PMID: 24816568     DOI: 10.1016/j.copbio.2014.04.011

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  16 in total

1.  Evolution of chemical diversity by coordinated gene swaps in type II polyketide gene clusters.

Authors:  Maureen E Hillenmeyer; Gergana A Vandova; Erin E Berlew; Louise K Charkoudian
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-23       Impact factor: 11.205

Review 2.  Synthetic Biology of Natural Products.

Authors:  Rainer Breitling; Eriko Takano
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-10-03       Impact factor: 10.005

Review 3.  Saccharomyces cerevisiae as a tool for mining, studying and engineering fungal polyketide synthases.

Authors:  Carly Bond; Yi Tang; Li Li
Journal:  Fungal Genet Biol       Date:  2016-02-02       Impact factor: 3.495

Review 4.  Architecture of the polyketide synthase module: surprises from electron cryo-microscopy.

Authors:  Janet L Smith; Georgios Skiniotis; David H Sherman
Journal:  Curr Opin Struct Biol       Date:  2015-03-16       Impact factor: 6.809

5.  Sticky swinging arm dynamics: studies of an acyl carrier protein domain from the mycolactone polyketide synthase.

Authors:  Steven Vance; Olga Tkachenko; Ben Thomas; Mona Bassuni; Hui Hong; Daniel Nietlispach; William Broadhurst
Journal:  Biochem J       Date:  2016-02-26       Impact factor: 3.857

Review 6.  Synthetic biology advances for pharmaceutical production.

Authors:  Rainer Breitling; Eriko Takano
Journal:  Curr Opin Biotechnol       Date:  2015-03-03       Impact factor: 9.740

Review 7.  Biofuel production: an odyssey from metabolic engineering to fermentation scale-up.

Authors:  Whitney Hollinshead; Lian He; Yinjie J Tang
Journal:  Front Microbiol       Date:  2014-07-09       Impact factor: 5.640

Review 8.  Roles of type II thioesterases and their application for secondary metabolite yield improvement.

Authors:  Magdalena Kotowska; Krzysztof Pawlik
Journal:  Appl Microbiol Biotechnol       Date:  2014-08-02       Impact factor: 4.813

9.  End-to-end automated microfluidic platform for synthetic biology: from design to functional analysis.

Authors:  Gregory Linshiz; Erik Jensen; Nina Stawski; Changhao Bi; Nick Elsbree; Hong Jiao; Jungkyu Kim; Richard Mathies; Jay D Keasling; Nathan J Hillson
Journal:  J Biol Eng       Date:  2016-02-02       Impact factor: 4.355

10.  Determination of a Screening Metric for High Diversity DNA Libraries.

Authors:  Nicholas J Guido; Steven Handerson; Elaine M Joseph; Devin Leake; Li A Kung
Journal:  PLoS One       Date:  2016-12-08       Impact factor: 3.240

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